Gene detail

Detailed information of OS493_008161-T1 in Lophelia pertusa

Genomic Location: scaffold_19:445452...448930
NR annotation: KAJ7392921.1, hypothetical protein OS493_008161 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E2RQ08	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Canis lupus familiaris OX=9615 GN=RPN1 PE=1 SV=1
P07153	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Rattus norvegicus OX=10116 GN=Rpn1 PE=2 SV=1
Q91YQ5	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Mus musculus OX=10090 GN=Rpn1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006390 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14966 all species →	DNA_repr_REX1B	DNA repair REX1-B	Family	Interproscan
PF04597 all species →	Ribophorin_I	Ribophorin I	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007676 all species →	Family	Ribophorin I	Interproscan
IPR039491 all species →	Family	Required for excision 1-B domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21049 all species →	RIBOPHORIN I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0008250 all species →	Cellular Component	oligosaccharyltransferase complex	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0018279 all species →	Biological Process	protein N-linked glycosylation via asparagine	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008161-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008161-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

428.8Max TPM

287.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	257.44	364.49
polyp at pH7 6	18	18	249.29	340.11
coral polyp · control treatment	16	16	350.41	428.84
coral polyp · oil and dispersant treatment	16	16	344.57	395.49
coral polyp · oil treatment	16	16	354.45	411.15
coral polyp · dispersant treatment	16	16	226.55	282.64
Polyp	10	10	206.13	274.59

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	364.49
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	334.22
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	306.17
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	298.18
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	295.05
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	292.03
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	277.54
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	276.86
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	263.84
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	260.76
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	249.72
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	233.37
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	229.74
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	226.84
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	212.95
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	180.42
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	168.43
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	163.32
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	340.11
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	331.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	286.93
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	284.38
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	273.68
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	273.66
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	271.27
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	256.44
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	255.35
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	253.76
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	253.74
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	251.61
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	245.24
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	239.94
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	213.43
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	208.39
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	127.92
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	120.36
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	428.84
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	398.38
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	385.55
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	379.28
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	376.94
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	367.23
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	358.68
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	355.16
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	353.78
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	350.39
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	347.96
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	346.31
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	345.39
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	323.92
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	251.80
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	236.98
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	395.49
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	395.13
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	386.46
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	365.34
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	361.52
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	356.21
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	355.24
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	348.77
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	347.68
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	347.21
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	343.30
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	342.12
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	336.03
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	298.77
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	268.48
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	265.37
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	411.15
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	410.80
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	406.34
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	399.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	396.52
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	391.46
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	390.68
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	386.46
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	382.43
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	371.32
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	371.06
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	349.80
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	342.41
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	309.92
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	184.77
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	166.31
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	282.64
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	277.66
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	275.05
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	271.77
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	260.68
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	260.60
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	252.73
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	249.18
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	241.86
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	228.96
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	225.65
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	216.51
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	212.70
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	209.66
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	104.46
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.64
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	274.59
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	266.46
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	253.88
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	223.99
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	218.14
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	207.82
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	193.81
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	162.74
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	152.32
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	107.58

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.