Detailed information of OS493_008185-T1 in Lophelia pertusa

Genomic Location: scaffold_19:793556...794369
NR annotation: KAJ7392944.1, Trafficking protein particle complex subunit 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A7RVK7Probable trafficking protein particle complex subunit 2 OS=Nematostella vectensis OX=45351 GN=v1g94938 PE=3 SV=1
D3ZVF4Trafficking protein particle complex subunit 2B OS=Rattus norvegicus OX=10116 GN=Trappc2b PE=3 SV=1
Q5ZKP4Trafficking protein particle complex subunit 2 OS=Gallus gallus OX=9031 GN=TRAPPC2 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009268 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04628
all species →		Sedlin_NSedlin, N-terminal conserved regionFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006722
all species →		FamilyTrafficking protein particle complex subunit 2Interproscan
IPR011012
all species →		Homologous_superfamilyLongin-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12403
all species →		TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006888
all species →		Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0030008
all species →		Cellular ComponentTRAPP complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_008185-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_008185-T1 global co-expression network
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