Gene detail

Detailed information of OS493_008215-T1 in Lophelia pertusa

Genomic Location: scaffold_19:1250288...1256840
NR annotation: KAJ7392970.1, Serine/threonine-protein kinase plk4 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7SNN5	Serine/threonine-protein kinase PLK4 OS=Nematostella vectensis OX=45351 GN=v1g246408 PE=3 SV=1
B3DL84	Serine/threonine-protein kinase PLK4 OS=Xenopus tropicalis OX=8364 GN=plk4 PE=2 SV=1
Q6PAD2	Serine/threonine-protein kinase PLK4 OS=Xenopus laevis OX=8355 GN=plk4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005533 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18409 all species →	Plk4_PB2	Polo-like Kinase 4 Polo Box 2	Domain	Interproscan
PF18190 all species →	Plk4_PB1	Polo-like Kinase 4 Polo Box 1	Domain	Interproscan
PF01179 all species →	Cu_amine_oxid	Copper amine oxidase, enzyme domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036460 all species →	Homologous_superfamily	Copper amine oxidase, catalytic domain superfamily	Interproscan
IPR033698 all species →	Domain	Plk4, second cryptic polo-box domain	Interproscan
IPR000959 all species →	Domain	POLO box domain	Interproscan
IPR033696 all species →	Domain	Plk4, C-terminal polo-box domain	Interproscan
IPR033699 all species →	Domain	Plk4, first cryptic polo-box domain	Interproscan
IPR015798 all species →	Domain	Copper amine oxidase, catalytic domain	Interproscan
IPR046437 all species →	Homologous_superfamily	Serine/threonine-protein kinase, first cryptic polo-box domain superfamily	Interproscan
IPR047108 all species →	Homologous_superfamily	Plk4-like, second cryptic polo-box domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24345 all species →	SERINE/THREONINE-PROTEIN KINASE PLK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0008131 all species →	Molecular Function	primary methylamine oxidase activity	Interproscan
GO:0009308 all species →	Biological Process	amine metabolic process	Interproscan
GO:0048038 all species →	Molecular Function	quinone binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0007052 all species →	Biological Process	mitotic spindle organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008215-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_008215-T1 global co-expression network