Gene detail

Detailed information of OS493_008226-T1 in Lophelia pertusa

Genomic Location: scaffold_19:1416183...1417328
NR annotation: KAJ7392981.1, hypothetical protein OS493_008226 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q924H0	Neuropeptide FF receptor 2 OS=Mus musculus OX=10090 GN=Npffr2 PE=2 SV=2
Q9EQD2	Neuropeptide FF receptor 2 OS=Rattus norvegicus OX=10116 GN=Npffr2 PE=2 SV=1
P34992	Neuropeptide Y receptor type 1 OS=Xenopus laevis OX=8355 GN=npy1r PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001753 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24235 all species →	NEUROPEPTIDE Y RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008226-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008226-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

32.0Max TPM

9.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.90	17.04
polyp at pH7 6	18	18	9.87	14.18
coral polyp · control treatment	16	16	8.65	12.35
coral polyp · oil and dispersant treatment	16	16	6.97	12.28
coral polyp · oil treatment	16	16	9.22	15.47
coral polyp · dispersant treatment	16	16	12.30	32.00
Polyp	10	10	11.67	15.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.04
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.42
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.32
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.84
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.83
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.76
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.74
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.17
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.09
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.63
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.40
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.39
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.01
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.54
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.94
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.15
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.18
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.08
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.88
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.47
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.23
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.95
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.18
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.15
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.56
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.39
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.21
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.88
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.85
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.86
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.11
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.02
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.84
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.35
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.36
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.15
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.99
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.34
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.88
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.03
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.70
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.62
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.83
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.55
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.45
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.28
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.89
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.87
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.28
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.66
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.67
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.78
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.12
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.63
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.52
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.46
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.44
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.42
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.37
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.90
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.31
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.19
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.85
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.92
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.47
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.51
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.40
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.36
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.15
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.89
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.11
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.13
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.79
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.67
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.52
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.23
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.08
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.89
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.51
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.00
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.90
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.65
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.15
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.24
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.81
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.49
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.56
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.34
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.16
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.82
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.76
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.18
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.06
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.63
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.99
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	15.05
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.21
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	13.92
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.30
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.45
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	11.77
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.94
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.44
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.85
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.80

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.