Gene detail

Detailed information of OS493_008249-T1 in Lophelia pertusa

Genomic Location: scaffold_19:1807465...1812635
NR annotation: KAJ7393001.1, hypothetical protein OS493_008249 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y603	Transcription factor ETV7 OS=Homo sapiens OX=9606 GN=ETV7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001962 (this species only)
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan
PF02198 all species →	SAM_PNT	Sterile alpha motif (SAM)/Pointed domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR003118 all species →	Domain	Pointed domain	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

No PANTHER signature was detected for OS493_008249-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008249-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008249-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

564.5Max TPM

135.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	53.63	77.27
polyp at pH7 6	18	18	62.24	79.18
coral polyp · control treatment	16	16	123.27	237.26
coral polyp · oil and dispersant treatment	16	16	145.78	214.49
coral polyp · oil treatment	16	16	105.02	160.97
coral polyp · dispersant treatment	16	16	389.84	564.49
Polyp	10	10	63.21	134.93

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.27
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.59
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.03
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.80
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.15
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.59
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.10
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.75
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.25
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.86
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.37
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.05
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.83
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.78
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.63
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.97
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.77
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.49
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.18
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.20
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.06
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.35
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.13
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.69
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.43
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.22
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.81
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	64.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.26
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.76
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.97
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.53
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.70
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.43
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.32
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	237.26
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	217.28
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	151.93
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	142.59
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	124.53
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	117.81
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	115.23
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	113.08
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	109.83
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	102.56
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	100.95
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	98.77
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	96.46
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	91.27
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.20
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.55
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	214.49
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	197.72
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	173.09
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	169.46
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	167.36
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	160.50
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	158.20
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	149.41
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	143.82
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	143.21
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	123.84
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	116.54
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	115.32
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	110.66
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	107.46
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.39
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	160.97
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	142.35
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	137.36
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	128.02
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	127.38
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	121.05
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	112.34
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	111.90
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	108.40
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	105.03
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	91.21
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.09
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.61
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.85
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.81
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.94
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	564.49
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	550.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	524.26
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	509.36
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	483.42
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	466.83
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	438.94
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	405.91
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	401.78
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	377.33
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	338.51
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	338.07
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	334.83
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	265.32
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	155.82
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	82.40
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	134.93
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	95.34
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	85.18
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	53.33
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	51.92
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	50.08
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	49.01
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	41.56
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	39.35
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	31.34

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.