Gene detail

Detailed information of OS493_008250-T1 in Lophelia pertusa

Genomic Location: scaffold_19:1828709...1842176
NR annotation: KAJ7393002.1, hypothetical protein OS493_008250 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8MY62	Putative beta-lactamase-like 1 OS=Homo sapiens OX=9606 GN=LACTBL1 PE=1 SV=2
Q54SB6	Beta-lactamase-like protein 3 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0282555 PE=3 SV=1
Q7KWX1	Beta-lactamase-like protein 1 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0276787 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000640 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00144 all species →	Beta-lactamase	Beta-lactamase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012338 all species →	Homologous_superfamily	Beta-lactamase/transpeptidase-like	Interproscan
IPR001466 all species →	Domain	Beta-lactamase-related	Interproscan
IPR051478 all species →	Family	Beta-lactamase-like Antibiotic Biosynthesis/Resistance	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22935 all species →	PENICILLIN-BINDING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_008250-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008250-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008250-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

116.8Max TPM

33.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	26.63	47.07
polyp at pH7 6	18	18	31.74	83.26
coral polyp · control treatment	16	16	34.70	59.81
coral polyp · oil and dispersant treatment	16	16	32.44	62.95
coral polyp · oil treatment	16	16	52.08	103.31
coral polyp · dispersant treatment	16	16	24.94	37.38
Polyp	10	9	29.93	116.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.07
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.02
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.42
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.57
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.20
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.29
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.07
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.31
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.17
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.64
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.58
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.93
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.72
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.05
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.91
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.73
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.80
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.94
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.26
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	82.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.97
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.97
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.74
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.95
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.72
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.73
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.46
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.07
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.31
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.14
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.29
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.65
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.09
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.95
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.87
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.84
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.81
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.69
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.34
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.02
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.85
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.58
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.34
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.23
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.93
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.36
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.19
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.53
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.79
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.89
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.53
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.12
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.95
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.47
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.23
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.85
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.85
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.18
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.07
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.96
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.33
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.19
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.56
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.34
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.50
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.94
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	103.31
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	84.14
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.37
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.22
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.03
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.97
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.88
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.70
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.38
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.04
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.08
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.41
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.79
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.71
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.13
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.15
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.38
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.11
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.78
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.06
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.35
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.23
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.71
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.57
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.07
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.15
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.98
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.89
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.86
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.37
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.35
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.24
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	116.81
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	77.08
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	28.20
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	28.07
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.68
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	16.39
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.16
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.75
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.16
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.