Gene detail

Detailed information of OS493_008346-T1 in Lophelia pertusa

Genomic Location: scaffold_19:2518268...2531792
NR annotation: KAJ7393050.1, Post-GPI attachment to protein factor 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6H7B8	Acyltransferase PGAP2 OS=Bos taurus OX=9913 GN=PGAP2 PE=2 SV=1
Q5BL33	Acyltransferase PGAP2 OS=Danio rerio OX=7955 GN=pgap2 PE=2 SV=1
Q9UHJ9	Acyltransferase PGAP2 OS=Homo sapiens OX=9606 GN=PGAP2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002918 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10277 all species →	Frag1	Frag1/DRAM/Sfk1 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039545 all species →	Family	Post-GPI attachment to proteins factor 2	Interproscan
IPR019402 all species →	Family	Frag1/DRAM/Sfk1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12892 all species →	FGF RECEPTOR ACTIVATING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006506 all species →	Biological Process	GPI anchor biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008346-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008346-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

28.7Max TPM

8.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.33	28.68
polyp at pH7 6	18	14	11.57	28.45
coral polyp · control treatment	16	16	7.61	22.82
coral polyp · oil and dispersant treatment	16	15	8.03	28.22
coral polyp · oil treatment	16	16	9.03	25.61
coral polyp · dispersant treatment	16	16	3.22	7.16
Polyp	10	10	5.32	9.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.68
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.11
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.71
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.71
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.56
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.24
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.53
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.45
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.17
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.68
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.43
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.53
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.22
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.09
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.58
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.21
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.83
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.45
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.63
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.86
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.19
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.56
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.15
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.91
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.66
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.96
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.74
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.13
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.97
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.59
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.43
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.82
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.96
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.63
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.40
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.77
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.18
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.50
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.74
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.69
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.40
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.70
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.68
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.36
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.22
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.94
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.80
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.48
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.83
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.68
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.49
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.83
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.16
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.88
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.72
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.95
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.89
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.32
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.22
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.61
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.25
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.43
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.29
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.64
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.96
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.01
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.42
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.15
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.96
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.38
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.27
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.66
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.57
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.25
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.16
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.45
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.86
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.77
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.53
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.47
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.35
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.86
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.20
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.51
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.36
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.96
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.86
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.75
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.24
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.77
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.93
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.47
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.49
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.93
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.93
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.50
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.67
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.63
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.87

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.