Gene detail

Detailed information of OS493_008373-T1 in Lophelia pertusa

Genomic Location: scaffold_19:3052799...3053275
NR annotation: KAJ7393075.1, hypothetical protein OS493_008373 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WVD5	Mitochondrial ornithine transporter 1 OS=Mus musculus OX=10090 GN=Slc25a15 PE=1 SV=1
Q9Y619	Mitochondrial ornithine transporter 1 OS=Homo sapiens OX=9606 GN=SLC25A15 PE=1 SV=1
A0A0G2K309	Mitochondrial ornithine transporter 1 OS=Rattus norvegicus OX=10116 GN=Slc25a15 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000470 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR050567 all species →	Family	Mitochondrial Carrier	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45624 all species →	MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000064 all species →	Molecular Function	L-ornithine transmembrane transporter activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:1990575 all species →	Biological Process	mitochondrial L-ornithine transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008373-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008373-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

26.6Max TPM

6.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.11	5.60
polyp at pH7 6	18	16	3.71	7.78
coral polyp · control treatment	16	16	8.64	17.05
coral polyp · oil and dispersant treatment	16	16	13.15	21.68
coral polyp · oil treatment	16	16	6.58	11.07
coral polyp · dispersant treatment	16	16	10.08	26.57
Polyp	10	10	2.24	4.83

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.60
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.17
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.03
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.69
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.46
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.89
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.33
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.13
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.67
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.20
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.17
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.99
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.96
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.75
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.54
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.02
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.20
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.04
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.92
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.72
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.23
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.20
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.71
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.27
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.11
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.91
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.86
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.33
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.21
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.14
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.13
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.05
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.02
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.47
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.89
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.86
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.69
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.40
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.04
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.26
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.12
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.70
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.09
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.44
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.05
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.81
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.68
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.48
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.94
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.48
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.32
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.57
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.25
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.25
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.93
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.94
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.56
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.23
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.47
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.64
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.77
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.85
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.07
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.79
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.79
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.63
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.39
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.57
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.27
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.09
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.78
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.62
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.61
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.88
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.56
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.66
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.56
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.98
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.57
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.77
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.64
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.72
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.55
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.90
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.05
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.63
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.34
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.19
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.06
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.76
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.20
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.72
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.83
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.75
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.82
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.92
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.27
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.25
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.19
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.71
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.43
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.29

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.