Gene detail

Detailed information of OS493_008374-T1 in Lophelia pertusa

Genomic Location: scaffold_19:3055184...3057150
NR annotation: KAJ7393076.1, hypothetical protein OS493_008374 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y619	Mitochondrial ornithine transporter 1 OS=Homo sapiens OX=9606 GN=SLC25A15 PE=1 SV=1
Q9WVD5	Mitochondrial ornithine transporter 1 OS=Mus musculus OX=10090 GN=Slc25a15 PE=1 SV=1
A0A0G2K309	Mitochondrial ornithine transporter 1 OS=Rattus norvegicus OX=10116 GN=Slc25a15 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000470 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR050567 all species →	Family	Mitochondrial Carrier	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45624 all species →	MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000064 all species →	Molecular Function	L-ornithine transmembrane transporter activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:1990575 all species →	Biological Process	mitochondrial L-ornithine transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15109	SLC25A20_29, CACT, CACL, CRC1; solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008374-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

31.2Max TPM

10.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	5.36	9.98
polyp at pH7 6	18	17	7.12	21.71
coral polyp · control treatment	16	16	13.07	31.21
coral polyp · oil and dispersant treatment	16	16	20.06	30.90
coral polyp · oil treatment	16	16	10.93	19.71
coral polyp · dispersant treatment	16	16	13.52	29.36
Polyp	10	10	5.41	12.51

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.98
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.40
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.05
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.68
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.65
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.41
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.10
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.89
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.64
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.91
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.75
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.27
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.08
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.87
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.55
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.22
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.71
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.17
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.06
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.80
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.33
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.50
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.08
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.84
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.75
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.35
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.81
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.44
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.18
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.76
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.63
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.30
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.48
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.21
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.99
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.54
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.25
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.45
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.81
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.38
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.09
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.65
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.99
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.49
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.35
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.13
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.79
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.96
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.07
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.61
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.07
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.64
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.06
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.12
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.72
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.36
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.34
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.65
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.44
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.66
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.21
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.13
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.35
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.77
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.71
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.55
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.94
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.56
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.40
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.62
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.52
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.45
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.70
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.12
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.26
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.34
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.40
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.39
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.05
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.36
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.29
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.99
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.21
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.89
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.71
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.39
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.90
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.44
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.77
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.95
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.61
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.55
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.44
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.51
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.12
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.42
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.01
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.56
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.99
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.63
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.20
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.42
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.25

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.