Gene detail

Detailed information of OS493_008409-T1 in Lophelia pertusa

Genomic Location: scaffold_19:3379554...3382498
NR annotation: KAJ7393110.1, hypothetical protein OS493_008409 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O94915	Protein furry homolog-like OS=Homo sapiens OX=9606 GN=FRYL PE=1 SV=2
Q9VT28	Protein furry OS=Drosophila melanogaster OX=7227 GN=fry PE=1 SV=2
E9Q8I9	Protein furry homolog OS=Mus musculus OX=10090 GN=Fry PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002627 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14225 all species →	MOR2-PAG1_C	Cell morphogenesis C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025481 all species →	Domain	Cell morphogenesis protein C-terminal	Interproscan
IPR039867 all species →	Family	Protein furry/Tao3/Mor2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12295 all species →	FURRY-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000902 all species →	Biological Process	cell morphogenesis	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0030427 all species →	Cellular Component	site of polarized growth	Interproscan
GO:0031175 all species →	Biological Process	neuron projection development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008409-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008409-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

37.8Max TPM

11.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.31	13.97
polyp at pH7 6	18	17	6.63	13.69
coral polyp · control treatment	16	16	18.68	37.82
coral polyp · oil and dispersant treatment	16	16	13.77	20.22
coral polyp · oil treatment	16	16	13.42	30.15
coral polyp · dispersant treatment	16	16	12.61	28.52
Polyp	10	9	2.02	4.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.97
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.68
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.67
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.62
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.28
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.91
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.71
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.26
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.08
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.13
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.03
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.93
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.44
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.92
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.81
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.79
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.40
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.99
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.69
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.41
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.39
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.17
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.81
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.98
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.96
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.61
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.94
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.41
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.25
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.08
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.58
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.57
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.19
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.57
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.82
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.78
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.23
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.73
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.77
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.76
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.39
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.59
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.51
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.25
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.81
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.22
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.27
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.64
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.10
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.22
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.21
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.87
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.63
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.08
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.15
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.15
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.20
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.56
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.31
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.11
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.17
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.13
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.61
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.76
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.20
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.16
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.95
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.15
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.47
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.10
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.98
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.72
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.54
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.85
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.64
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.59
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.99
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.89
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.66
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.52
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.55
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.23
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.67
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.92
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.75
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.34
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.83
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.16
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.55
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.45
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.26
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.96
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.37
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.85
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.56
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.78
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.57
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.08
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.28
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.08
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.16
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.