Gene detail

Detailed information of OS493_008460-T1 in Lophelia pertusa

Genomic Location: scaffold_20:106072...107279
NR annotation: KAJ7386341.1, hypothetical protein OS493_008460 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6QI06	Rapamycin-insensitive companion of mTOR OS=Mus musculus OX=10090 GN=Rictor PE=1 SV=2
Q6R327	Rapamycin-insensitive companion of mTOR OS=Homo sapiens OX=9606 GN=RICTOR PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003140 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14664 all species →	RICTOR_N	Rapamycin-insensitive companion of mTOR, N-term	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028267 all species →	Domain	Rapamycin-insensitive companion of mTOR, N-terminal domain	Interproscan
IPR028268 all species →	Family	Pianissimo family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13298 all species →	CYTOSOLIC REGULATOR PIANISSIMO	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031929 all species →	Biological Process	TOR signaling	Interproscan
GO:0031932 all species →	Cellular Component	TORC2 complex	Interproscan
GO:0038203 all species →	Biological Process	TORC2 signaling	Interproscan
GO:0043539 all species →	Molecular Function	protein serine/threonine kinase activator activity	Interproscan
GO:0051897 all species →	Biological Process	positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008460-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008460-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

97TPM > 0

7Conditions

14.3Max TPM

3.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	4.15	12.12
polyp at pH7 6	18	12	2.84	9.12
coral polyp · control treatment	16	16	4.82	14.26
coral polyp · oil and dispersant treatment	16	15	3.17	8.76
coral polyp · oil treatment	16	16	4.18	8.85
coral polyp · dispersant treatment	16	16	4.43	12.57
Polyp	10	6	0.73	3.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.12
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.09
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.88
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.51
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.39
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.86
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.16
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.09
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.09
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.85
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.78
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.64
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.41
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.75
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.08
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.93
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.12
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.46
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.99
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.92
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.28
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.10
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.03
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.41
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.16
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.07
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.31
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.25
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.26
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.78
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.84
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.31
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.22
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.51
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.95
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.48
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.96
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.48
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.39
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.26
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.20
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.41
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.76
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.11
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.22
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.03
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.17
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.06
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.46
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.46
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.71
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.44
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.27
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.06
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.88
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.73
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.85
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.20
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.46
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.27
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.20
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.14
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.70
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.26
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.86
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.72
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.17
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.96
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.19
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.63
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.13
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.21
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.57
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.02
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.99
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.97
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.68
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.70
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.62
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.87
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.69
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.64
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.52
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.60
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.18
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.42
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.26
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.19
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.30
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.20
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.63
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.44
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.37
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.