Gene detail

Detailed information of OS493_008469-T1 in Lophelia pertusa

Genomic Location: scaffold_20:248038...248901
NR annotation: KAJ7386348.1, hypothetical protein OS493_008469 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GQ33	Calmodulin-lysine N-methyltransferase OS=Xenopus laevis OX=8355 GN=camkmt PE=1 SV=1
Q7Z624	Calmodulin-lysine N-methyltransferase OS=Homo sapiens OX=9606 GN=CAMKMT PE=1 SV=2
Q3U2J5	Calmodulin-lysine N-methyltransferase OS=Mus musculus OX=10090 GN=Camkmt PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009446 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10294 all species →	Methyltransf_16	Lysine methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019410 all species →	Family	Lysine methyltransferase	Interproscan
IPR025800 all species →	Family	Calmodulin-lysine N-methyltransferase	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13539 all species →	CALMODULIN-LYSINE N-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0018025 all species →	Molecular Function	calmodulin-lysine N-methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18826	CAMKMT; calmodulin-lysine N-methyltransferase	EC:2.1.1.60	Lysine degradation	ko00310	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008469-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

9.5Max TPM

3.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.72	9.46
polyp at pH7 6	18	18	4.19	6.89
coral polyp · control treatment	16	16	4.69	6.40
coral polyp · oil and dispersant treatment	16	16	3.54	5.31
coral polyp · oil treatment	16	16	4.23	6.72
coral polyp · dispersant treatment	16	16	1.78	3.09
Polyp	10	10	4.37	6.37

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.46
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.92
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.82
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.25
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.63
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.29
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.07
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.93
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.89
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.66
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.50
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.43
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.34
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.61
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.17
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.02
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.01
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.90
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.89
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.65
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.62
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.24
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.08
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.55
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.95
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.88
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.82
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.46
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.28
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.55
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.40
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.36
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.02
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.83
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.40
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.39
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.29
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.18
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.09
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.08
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.71
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.57
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.46
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.39
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.68
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.50
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.49
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.06
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.74
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.99
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.31
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.18
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.10
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.83
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.40
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.24
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.95
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.77
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.16
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.13
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.97
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.79
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.78
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.06
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.69
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.27
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.72
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.68
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.10
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.59
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.65
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.65
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.55
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.31
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.61
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.33
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.10
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.65
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.57
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.71
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.09
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.47
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.41
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.14
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.13
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.99
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.86
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.76
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.75
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.61
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.28
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.71
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.57
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.37
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.36
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.76
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.29
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.90
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.27
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.71
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.28
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.15
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.63

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.