Gene detail

Detailed information of OS493_008474-T1 in Lophelia pertusa

Genomic Location: scaffold_20:307011...314543
NR annotation: KAJ7386353.1, hypothetical protein OS493_008474 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6QI06	Rapamycin-insensitive companion of mTOR OS=Mus musculus OX=10090 GN=Rictor PE=1 SV=2
Q6R327	Rapamycin-insensitive companion of mTOR OS=Homo sapiens OX=9606 GN=RICTOR PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003140 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14668 all species →	RICTOR_V	Rapamycin-insensitive companion of mTOR, domain 5	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029452 all species →	Domain	Rapamycin-insensitive companion of mTOR, domain 5	Interproscan

PANTHER

No PANTHER signature was detected for OS493_008474-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_008474-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008474-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008474-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

17.8Max TPM

8.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.00	15.49
polyp at pH7 6	18	16	8.28	16.00
coral polyp · control treatment	16	16	10.85	17.78
coral polyp · oil and dispersant treatment	16	16	7.78	15.03
coral polyp · oil treatment	16	16	10.53	16.36
coral polyp · dispersant treatment	16	16	8.92	15.64
Polyp	10	9	3.15	7.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.49
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.11
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.01
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.07
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.44
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.93
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.58
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.21
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.44
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.65
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.44
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.39
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.69
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.54
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.80
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.08
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.86
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.43
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.44
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.98
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.36
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.46
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.39
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.06
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.88
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.47
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.82
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.67
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.29
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.97
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.78
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.01
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.68
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.73
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.70
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.45
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.91
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.90
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.57
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.57
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.43
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.44
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.96
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.51
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.03
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.27
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.54
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.09
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.08
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.84
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.48
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.41
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.22
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.96
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.42
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.15
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.89
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.03
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.70
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.36
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.36
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.64
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.80
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.75
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.43
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.80
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.41
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.67
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.98
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.80
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.57
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.92
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.54
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.92
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.64
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.68
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.75
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.17
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.34
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.03
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.85
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.78
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.81
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.25
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.60
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.67
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.12
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.94
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.80
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.23
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.85
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.69
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.86
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.37
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.52
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.12
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.