Gene detail

Detailed information of OS493_008482-T1 in Lophelia pertusa

Genomic Location: scaffold_20:343513...346795
NR annotation: KAJ7386361.1, Trafficking protein particle complex subunit 5 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5F359	Trafficking protein particle complex subunit 5 OS=Gallus gallus OX=9031 GN=TRAPPC5 PE=2 SV=1
Q2NL13	Trafficking protein particle complex subunit 5 OS=Bos taurus OX=9913 GN=TRAPPC5 PE=2 SV=1
Q8IUR0	Trafficking protein particle complex subunit 5 OS=Homo sapiens OX=9606 GN=TRAPPC5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007439 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04051 all species →	TRAPP	Transport protein particle (TRAPP) component	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016696 all species →	Family	TRAPP I complex, subunit 5	Interproscan
IPR024096 all species →	Homologous_superfamily	NO signalling/Golgi transport ligand-binding domain superfamily	Interproscan
IPR007194 all species →	Family	Transport protein particle (TRAPP) component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20902 all species →	41-2 PROTEIN ANTIGEN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030008 all species →	Cellular Component	TRAPP complex	Interproscan
GO:0048193 all species →	Biological Process	Golgi vesicle transport	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:1990070 all species →	Cellular Component	TRAPPI protein complex	Interproscan
GO:1990071 all species →	Cellular Component	TRAPPII protein complex	Interproscan
GO:1990072 all species →	Cellular Component	TRAPPIII protein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20280	TRAPPC5, TRS31; trafficking protein particle complex subunit 5	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008482-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

86.5Max TPM

23.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	25.51	46.77
polyp at pH7 6	18	18	29.97	51.92
coral polyp · control treatment	16	16	19.52	28.14
coral polyp · oil and dispersant treatment	16	16	12.77	17.84
coral polyp · oil treatment	16	16	21.20	25.67
coral polyp · dispersant treatment	16	16	11.48	17.84
Polyp	10	10	56.90	86.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.77
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.57
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.07
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.15
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.67
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.32
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.21
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.13
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.68
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.90
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.82
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.80
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.41
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.22
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.78
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.42
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.22
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.92
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.95
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.95
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.82
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.37
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.81
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.29
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.82
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.39
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.79
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.35
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.58
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.76
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.25
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.40
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.12
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.32
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.14
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.08
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.70
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.68
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.57
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.27
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.98
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.34
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.13
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.35
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.95
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.97
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.50
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.99
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.49
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.13
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.84
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.34
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.22
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.16
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.09
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.92
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.69
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.63
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.83
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.27
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.93
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.91
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.81
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.40
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.26
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.09
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.67
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.22
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.65
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.33
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.80
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.11
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.87
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.88
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.29
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.24
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.24
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.57
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.51
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.26
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.35
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.84
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.09
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.77
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.76
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.25
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.40
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.03
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.54
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.82
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.72
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.34
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.27
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.89
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.06
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.70
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.13
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	86.54
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	81.75
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	81.18
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	80.74
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	52.94
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	49.65
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	46.06
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	33.27
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	31.34
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	25.49

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.