Gene detail

Detailed information of OS493_008499-T1 in Lophelia pertusa

Genomic Location: scaffold_20:501091...507452
NR annotation: KAJ7386376.1, Transmembrane protein 59 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4R8C8	Transmembrane protein 59 OS=Macaca fascicularis OX=9541 GN=TMEM59 PE=2 SV=1
Q5R800	Transmembrane protein 59 OS=Pongo abelii OX=9601 GN=TMEM59 PE=2 SV=1
Q9BXS4	Transmembrane protein 59 OS=Homo sapiens OX=9606 GN=TMEM59 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007523 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12280 all species →	BSMAP	Brain specific membrane anchored protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022065 all species →	Family	Uncharacterised protein family, TMEM59	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28652 all species →	TRANSMEMBRANE PROTEIN 59-LIKE PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_008499-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27309	TMEM59; transmembrane protein 59	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008499-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

88.2Max TPM

39.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	36.80	58.59
polyp at pH7 6	18	18	35.65	58.67
coral polyp · control treatment	16	16	48.83	76.83
coral polyp · oil and dispersant treatment	16	16	45.05	76.43
coral polyp · oil treatment	16	16	40.15	88.25
coral polyp · dispersant treatment	16	16	39.71	71.61
Polyp	10	10	24.50	48.31

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.59
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.34
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.94
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.45
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.28
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.27
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.02
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.11
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.39
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.91
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.52
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.89
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.44
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.74
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.39
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.24
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.91
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.02
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.67
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.02
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.36
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.06
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.90
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.89
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.64
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.39
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.27
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.41
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.44
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.15
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.13
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.93
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.31
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.90
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.79
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.83
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.99
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.78
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.54
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.09
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.61
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.91
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.33
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.23
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.15
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.78
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.51
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.71
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.83
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.24
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.74
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	76.43
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.96
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.70
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.56
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.99
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.25
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.57
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.85
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.41
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.28
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.99
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.81
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.76
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.63
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.25
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.34
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.25
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.86
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.08
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.59
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.97
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.71
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.70
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.34
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.45
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.44
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.64
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.86
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.35
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.67
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.98
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.59
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.61
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.56
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.47
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.41
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.73
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.81
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.02
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.46
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.81
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.55
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.02
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.63
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.05
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.04
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.30
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	48.31
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	39.23
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	35.30
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	29.59
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.21
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	19.07
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	18.95
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.71
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.32
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.34

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.