Gene detail

Detailed information of OS493_008534-T1 in Lophelia pertusa

Genomic Location: scaffold_20:910354...914139
NR annotation: KAJ7386410.1, hypothetical protein OS493_008534 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000019 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_008534-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR051622 all species →	Family	Receptor-type Tyrosine-protein Phosphatases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24051 all species →	SUSHI DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008534-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008534-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

20.5Max TPM

5.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.60	14.11
polyp at pH7 6	18	18	8.58	16.46
coral polyp · control treatment	16	16	3.46	9.24
coral polyp · oil and dispersant treatment	16	15	2.02	6.97
coral polyp · oil treatment	16	16	3.60	14.05
coral polyp · dispersant treatment	16	16	2.89	8.02
Polyp	10	10	9.86	20.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.11
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.98
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.95
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.08
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.35
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.33
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.09
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.29
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.96
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.70
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.59
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.47
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.22
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.15
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.64
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.37
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.46
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.07
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.67
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.46
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.71
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.41
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.62
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.50
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.55
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.22
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.03
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.20
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.76
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.21
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.01
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.99
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.72
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.87
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.24
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.26
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.06
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.61
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.77
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.39
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.17
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.15
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.45
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.21
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.09
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.05
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.95
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.68
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.48
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.97
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.45
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.02
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.13
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.80
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.57
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.50
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.44
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.36
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.29
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.15
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.79
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.54
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.35
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.05
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.10
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.75
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.12
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.82
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.30
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.26
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.08
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.95
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.74
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.55
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.99
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.78
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.73
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.51
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.91
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.02
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.41
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.90
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.73
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.50
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.01
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.56
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.53
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.14
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.12
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.76
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.41
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.59
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.20
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.46
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.14
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.78
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.33
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.54
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.78
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.44
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.76
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.29
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.12

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.