Detailed information of OS493_008557-T1 in Lophelia pertusa

Genomic Location: scaffold_20:1241669...1252524
NR annotation: KAJ7386429.1, hypothetical protein OS493_008557 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O77264RNA 3'-terminal phosphate cyclase OS=Drosophila melanogaster OX=7227 GN=Rtca PE=1 SV=1
Q8U0N7RNA 3'-terminal phosphate cyclase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=rtc PE=1 SV=1
O15746Probable RNA 3'-terminal phosphate cyclase OS=Dictyostelium discoideum OX=44689 GN=rtca PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001906 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00226
all species →		DnaJDnaJ domainDomainInterproscan
PF05189
all species →		RTC_insertRNA 3'-terminal phosphate cyclase (RTC), insert domainDomainInterproscan
PF01137
all species →		RTCRNA 3'-terminal phosphate cyclaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001623
all species →		DomainDnaJ domainInterproscan
IPR036553
all species →		Homologous_superfamilyRNA 3'-terminal phosphate cyclase, insert domain superfamilyInterproscan
IPR013792
all species →		Homologous_superfamilyRNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/betaInterproscan
IPR036869
all species →		Homologous_superfamilyChaperone J-domain superfamilyInterproscan
IPR000228
all species →		FamilyRNA 3'-terminal phosphate cyclaseInterproscan
IPR037136
all species →		Homologous_superfamilyRNA 3'-terminal phosphate cyclase domain superfamilyInterproscan
IPR013791
all species →		DomainRNA 3'-terminal phosphate cyclase, insert domainInterproscan
IPR023797
all species →		DomainRNA 3'-terminal phosphate cyclase domainInterproscan
IPR018253
all species →		Conserved_siteDnaJ domain, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11096
all species →		RNA 3' TERMINAL PHOSPHATE CYCLASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003824
all species →		Molecular Functioncatalytic activityInterproscan
GO:0003963
all species →		Molecular FunctionRNA-3'-phosphate cyclase activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006396
all species →		Biological ProcessRNA processingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_008557-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_008557-T1 global co-expression network
TOP