Gene detail

Detailed information of OS493_008599-T1 in Lophelia pertusa

Genomic Location: scaffold_20:1895901...1898432
NR annotation: KAJ7386467.1, Protein fam32a [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GQN4	Protein FAM32A-like OS=Danio rerio OX=7955 GN=fam32al PE=3 SV=1
Q9CR80	Protein FAM32A OS=Mus musculus OX=10090 GN=Fam32a PE=2 SV=1
A6QR31	Protein FAM32A OS=Bos taurus OX=9913 GN=FAM32A PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009439 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08555 all species →	FAM32A	FAM32A	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013865 all species →	Family	Protein FAM32A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13282 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13120	FAM32A; protein FAM32A	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008599-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

53.2Max TPM

15.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	12.58	25.47
polyp at pH7 6	18	16	12.52	22.23
coral polyp · control treatment	16	16	21.23	51.35
coral polyp · oil and dispersant treatment	16	16	17.59	53.24
coral polyp · oil treatment	16	16	17.58	37.05
coral polyp · dispersant treatment	16	16	10.83	23.35
Polyp	10	10	19.18	33.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.47
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.38
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.23
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.37
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.97
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.57
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.45
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.22
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.49
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.66
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.02
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.45
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.68
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.44
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.04
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.73
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.23
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.41
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.23
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.37
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.78
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.77
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.09
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.72
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.03
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.45
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.79
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.12
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.18
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.03
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.67
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.54
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.35
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.24
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.89
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.71
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.71
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.07
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.78
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.93
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.34
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.96
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.96
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.64
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.50
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.87
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.16
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.51
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.24
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.79
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.28
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.71
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.73
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.15
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.93
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.92
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.17
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.23
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.35
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.03
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.04
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.29
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.78
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.83
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.05
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.67
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.75
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.94
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.57
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.36
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.80
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.77
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.88
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.45
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.42
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.69
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.40
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.30
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.53
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.68
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.35
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.75
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.66
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.46
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.05
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.99
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.04
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.85
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.39
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.08
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.84
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.34
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.46
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	33.72
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	32.31
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	27.78
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.31
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.21
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	18.13
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.77
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.35
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.35
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.90

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.