Gene detail

Detailed information of OS493_008739-T1 in Lophelia pertusa

Genomic Location: scaffold_20:3677289...3684140
NR annotation: KAJ7386591.1, Phosphatidic acid phosphatase type 2A [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DAX2	Phospholipid phosphatase 2 OS=Mus musculus OX=10090 GN=Plpp2 PE=1 SV=1
Q8K593	Phospholipid phosphatase 2 OS=Rattus norvegicus OX=10116 GN=Plpp2 PE=2 SV=1
O88956	Phospholipid phosphatase 1 OS=Cavia porcellus OX=10141 GN=PLPP1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001178 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01569 all species →	PAP2	PAP2 superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000326 all species →	Domain	Phosphatidic acid phosphatase type 2/haloperoxidase	Interproscan
IPR043216 all species →	Family	Phosphatidate (PA) phosphatase-related	Interproscan
IPR036938 all species →	Homologous_superfamily	Phosphatidic acid phosphatase type 2/haloperoxidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10165 all species →	LIPID PHOSPHATE PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006644 all species →	Biological Process	phospholipid metabolic process	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0008195 all species →	Molecular Function	phosphatidate phosphatase activity	Interproscan
GO:0046839 all species →	Biological Process	phospholipid dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008739-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008739-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

92TPM > 0

7Conditions

17.6Max TPM

3.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	13	2.59	5.13
polyp at pH7 6	18	13	2.03	5.68
coral polyp · control treatment	16	15	4.66	17.63
coral polyp · oil and dispersant treatment	16	11	1.23	7.93
coral polyp · oil treatment	16	15	2.73	14.61
coral polyp · dispersant treatment	16	16	4.28	15.15
Polyp	10	9	4.49	8.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.13
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.06
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.77
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.63
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.51
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.26
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.69
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.66
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.57
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.53
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.53
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.71
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.50
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.68
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.85
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.63
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.89
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.76
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.33
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.15
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.87
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.87
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.49
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.47
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.14
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.63
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.50
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.27
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.47
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.02
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.64
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.74
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.73
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.82
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.73
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.54
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.94
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.78
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.53
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.29
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.93
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.16
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.97
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.51
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.33
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.26
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.10
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.87
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.80
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.52
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.61
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.35
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.90
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.87
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.65
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.27
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.76
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.22
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.06
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.74
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.73
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.64
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.57
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.37
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.15
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.38
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.46
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.78
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.67
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.41
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.91
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.52
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.29
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.94
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.42
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.34
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.09
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.59
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.38
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.62
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.42
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.85
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.62
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.06
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.24
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.45
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.14
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.51
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.