Gene detail

Detailed information of OS493_008743-T1 in Lophelia pertusa

Genomic Location: scaffold_20:3708926...3710962
NR annotation: KAJ7386595.1, hypothetical protein OS493_008743 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0DJE0	Protein PET100 homolog, mitochondrial OS=Mus musculus OX=10090 GN=Pet100 PE=1 SV=1
E1BHC3	Protein PET100 homolog, mitochondrial OS=Bos taurus OX=9913 GN=PET100 PE=3 SV=1
A1XQS1	Protein PET100 homolog, mitochondrial OS=Sus scrofa OX=9823 GN=PET100 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010940 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09803 all species →	Pet100	Pet100	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018625 all species →	Family	Protein Pet100	Interproscan

PANTHER

No PANTHER signature was detected for OS493_008743-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0033617 all species →	Biological Process	mitochondrial cytochrome c oxidase assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18186	PET100; protein PET100, animal type	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008743-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

79.7Max TPM

26.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	37.40	69.74
polyp at pH7 6	18	18	37.52	63.70
coral polyp · control treatment	16	16	18.76	44.05
coral polyp · oil and dispersant treatment	16	16	16.92	69.38
coral polyp · oil treatment	16	16	17.92	27.67
coral polyp · dispersant treatment	16	16	12.97	19.11
Polyp	10	10	46.67	79.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.74
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.52
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.69
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.48
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.31
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.37
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.80
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.55
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.34
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.86
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.21
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.15
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.37
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.69
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.20
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.75
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.98
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.22
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.70
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.79
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.02
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.66
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.84
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.11
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.28
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.19
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.94
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.49
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.76
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.77
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.58
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.46
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.13
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.48
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.91
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.05
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.70
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.76
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.09
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.07
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.63
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.37
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.72
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.85
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.49
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.93
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.88
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.95
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.15
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.52
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.38
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.18
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.72
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.37
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.08
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.52
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.40
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.79
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.74
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.73
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.27
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.20
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.56
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.53
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.25
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.99
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.67
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.30
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.55
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.03
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.29
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.84
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.57
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.58
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.29
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.56
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.90
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.41
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.77
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.26
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.11
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.01
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.80
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.44
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.38
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.53
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.57
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.56
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.48
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.47
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.36
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.07
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.20
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.12
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.84
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.56
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	79.75
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	78.39
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	67.92
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	57.50
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	39.19
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	35.12
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	33.20
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	27.94
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	25.96
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.75

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.