Gene detail

Detailed information of OS493_008793-T1 in Lophelia pertusa

Genomic Location: scaffold_21:82773...85093
NR annotation: KAJ7380343.1, Anion exchange protein 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O13134	Electrogenic sodium bicarbonate cotransporter 1 OS=Ambystoma tigrinum OX=8305 GN=SLC4A4 PE=2 SV=1
P16283	Anion exchange protein 3 OS=Mus musculus OX=10090 GN=Slc4a3 PE=1 SV=2
P23348	Anion exchange protein 3 OS=Rattus norvegicus OX=10116 GN=Slc4a3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0043082 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07565 all species →	Band_3_cyto	Band 3 cytoplasmic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013769 all species →	Domain	Band 3 cytoplasmic domain	Interproscan
IPR003020 all species →	Family	Bicarbonate transporter, eukaryotic	Interproscan
IPR016152 all species →	Homologous_superfamily	Phosphotransferase/anion transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11453 all species →	ANION EXCHANGE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006820 all species →	Biological Process	monoatomic anion transport	Interproscan
GO:0008509 all species →	Molecular Function	monoatomic anion transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005452 all species →	Molecular Function	solute:inorganic anion antiporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015701 all species →	Biological Process	bicarbonate transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0050801 all species →	Biological Process	monoatomic ion homeostasis	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008793-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008793-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

31.1Max TPM

9.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.89	19.43
polyp at pH7 6	18	17	9.48	16.67
coral polyp · control treatment	16	16	11.48	31.08
coral polyp · oil and dispersant treatment	16	16	8.82	14.45
coral polyp · oil treatment	16	16	11.03	19.75
coral polyp · dispersant treatment	16	15	6.78	12.14
Polyp	10	9	4.62	13.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.43
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.54
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.61
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.35
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.24
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.59
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.05
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.95
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.03
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.79
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.30
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.01
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.35
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.83
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.79
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.43
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.97
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.81
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.67
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.62
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.82
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.34
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.13
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.40
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.03
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.34
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.84
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.98
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.61
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.48
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.31
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.05
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.37
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.08
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.48
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.44
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.74
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.91
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.50
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.06
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.63
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.07
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.46
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.91
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.41
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.28
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.81
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.59
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.26
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.45
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.92
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.64
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.39
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.08
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.98
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.82
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.48
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.14
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.71
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.66
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.98
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.16
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.05
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.04
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.62
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.75
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.99
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.44
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.50
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.82
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.79
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.02
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.81
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.76
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.71
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.09
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.72
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.58
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.66
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.82
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.99
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.14
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.54
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.21
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.97
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.48
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.17
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.87
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.94
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.89
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.72
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.61
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.98
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.75
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.66
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.30
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.74
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.63
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.41
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.71
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.54
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.57
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.27
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.05
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.