Gene detail

Detailed information of OS493_008859-T1 in Lophelia pertusa

Genomic Location: scaffold_21:695722...700210
NR annotation: KAJ7380402.1, Anion exchange protein 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P04919	Band 3 anion transport protein OS=Mus musculus OX=10090 GN=Slc4a1 PE=1 SV=1
P23562	Band 3 anion transport protein OS=Rattus norvegicus OX=10116 GN=Slc4a1 PE=1 SV=3
A0A096X8J7	Anion exchange protein 3 OS=Danio rerio OX=7955 GN=Slc4a3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000857 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00955 all species →	HCO3_cotransp	HCO3- transporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011531 all species →	Domain	Bicarbonate transporter-like, transmembrane domain	Interproscan
IPR003020 all species →	Family	Bicarbonate transporter, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11453 all species →	ANION EXCHANGE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006820 all species →	Biological Process	monoatomic anion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005452 all species →	Molecular Function	solute:inorganic anion antiporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015701 all species →	Biological Process	bicarbonate transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0050801 all species →	Biological Process	monoatomic ion homeostasis	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008859-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008859-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

26.2Max TPM

9.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.92	26.21
polyp at pH7 6	18	16	10.92	18.58
coral polyp · control treatment	16	16	11.00	18.35
coral polyp · oil and dispersant treatment	16	16	6.52	11.80
coral polyp · oil treatment	16	16	9.42	22.43
coral polyp · dispersant treatment	16	15	8.10	16.43
Polyp	10	8	5.59	15.44

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.21
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.13
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.52
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.89
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.19
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.78
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.46
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.43
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.53
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.08
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.99
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.84
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.82
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.81
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.93
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.25
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.56
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.21
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.58
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.23
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.60
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.46
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.89
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.92
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.88
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.87
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.58
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.77
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.59
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.97
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.84
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.07
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.94
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.32
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.35
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.19
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.99
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.57
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.26
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.47
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.67
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.27
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.66
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.27
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.95
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.93
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.59
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.43
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.21
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.22
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.80
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.15
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.48
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.67
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.19
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.78
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.61
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.86
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.66
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.38
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.91
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.67
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.42
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.47
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.13
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.08
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.43
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.74
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.11
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.49
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.36
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.25
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.72
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.54
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.16
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.13
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.02
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.06
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.93
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.98
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.64
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.43
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.30
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.22
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.24
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.47
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.97
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.59
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.46
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.45
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.18
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.35
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.43
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.30
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.69
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.44
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.57
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.58
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.48
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.32
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.23
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.96
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.35
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.