Gene detail

Detailed information of OS493_008860-T1 in Lophelia pertusa

Genomic Location: scaffold_21:700242...702766
NR annotation: KAJ7380403.1, Anion exchange protein 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6SJP2	Anion exchange protein 2 OS=Equus caballus OX=9796 GN=SLC4A2 PE=2 SV=1
P48746	Anion exchange protein 2 OS=Oryctolagus cuniculus OX=9986 GN=SLC4A2 PE=1 SV=1
Q5RD44	Anion exchange protein 2 OS=Pongo abelii OX=9601 GN=SLC4A2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000857 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00955 all species →	HCO3_cotransp	HCO3- transporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003020 all species →	Family	Bicarbonate transporter, eukaryotic	Interproscan
IPR011531 all species →	Domain	Bicarbonate transporter-like, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11453 all species →	ANION EXCHANGE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005452 all species →	Molecular Function	solute:inorganic anion antiporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006820 all species →	Biological Process	monoatomic anion transport	Interproscan
GO:0015701 all species →	Biological Process	bicarbonate transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0050801 all species →	Biological Process	monoatomic ion homeostasis	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008860-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008860-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

33.8Max TPM

11.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.07	33.81
polyp at pH7 6	18	17	12.81	28.83
coral polyp · control treatment	16	16	12.09	19.78
coral polyp · oil and dispersant treatment	16	16	8.32	29.62
coral polyp · oil treatment	16	16	10.69	20.08
coral polyp · dispersant treatment	16	16	8.53	20.87
Polyp	10	9	9.36	18.06

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.81
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.65
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.18
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.17
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.04
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.29
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.34
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.31
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.92
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.33
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.26
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.05
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.77
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.15
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.97
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.45
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.07
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.83
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.24
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.07
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.35
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.92
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.40
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.57
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.29
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.20
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.94
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.10
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.55
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.55
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.87
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.80
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.58
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.78
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.71
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.24
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.13
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.93
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.79
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.64
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.17
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.12
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.45
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.19
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.01
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.85
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.38
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.58
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.50
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.62
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.42
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.49
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.35
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.79
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.64
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.37
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.19
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.79
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.43
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.01
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.60
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.88
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.94
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.47
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.18
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.08
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.96
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.93
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.51
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.15
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.25
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.91
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.51
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.41
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.75
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.38
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.80
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.79
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.68
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.67
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.19
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.87
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.56
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.80
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.80
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.14
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.92
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.55
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.13
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.96
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.37
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.18
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.99
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.44
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.89
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	18.06
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.41
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.66
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.72
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.65
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.57
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.86
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.58
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.