Gene detail

Detailed information of OS493_008883-T1 in Lophelia pertusa

Genomic Location: scaffold_21:1023456...1031515
NR annotation: KAJ7380425.1, Peptide-N(4)-(N-acetyl-beta- glucosaminyl)asparagine amidase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZJM3	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Gallus gallus OX=9031 GN=NGLY1 PE=2 SV=1
Q7KRR5	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Drosophila melanogaster OX=7227 GN=Pngl PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002148 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04721 all species →	PAW	PNGase C-terminal domain, mannose-binding module PAW	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR006588 all species →	Domain	Peptide N glycanase, PAW domain	Interproscan
IPR038680 all species →	Homologous_superfamily	PAW domain superfamily	Interproscan

PANTHER

No PANTHER signature was detected for OS493_008883-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006516 all species →	Biological Process	glycoprotein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008883-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008883-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

44.8Max TPM

15.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.71	24.69
polyp at pH7 6	18	18	16.30	20.38
coral polyp · control treatment	16	16	18.87	44.80
coral polyp · oil and dispersant treatment	16	16	13.58	28.84
coral polyp · oil treatment	16	16	14.52	21.08
coral polyp · dispersant treatment	16	16	15.63	33.73
Polyp	10	9	10.94	24.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.69
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.38
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.14
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.08
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.02
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.38
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.06
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.06
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.79
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.20
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.94
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.04
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.47
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.67
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.24
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.99
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.38
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.32
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.53
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.39
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.05
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.91
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.28
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.73
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.20
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.45
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.44
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.60
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.37
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.94
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.85
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.72
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.80
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.82
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.53
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.78
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.79
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.83
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.17
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.10
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.08
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.07
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.42
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.63
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.52
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.46
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.84
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.23
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.66
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.10
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.45
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.63
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.22
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.53
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.39
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.50
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.10
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.05
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.48
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.68
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.30
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.48
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.04
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.59
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.46
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.63
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.87
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.01
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.28
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.97
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.71
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.83
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.64
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.56
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.79
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.33
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.73
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.66
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.29
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.38
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.80
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.25
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.27
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.48
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.16
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.72
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.53
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.42
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.19
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.07
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.67
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.51
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	24.26
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.50
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	18.26
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	15.26
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.80
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.71
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.80
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.63
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.21
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.