Gene detail

Detailed information of OS493_008884-T1 in Lophelia pertusa

Genomic Location: scaffold_21:1032072...1038071
NR annotation: KAJ7380426.1, Peptide-N(4)-(N-acetyl-beta- glucosaminyl)asparagine amidase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XI55	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Rattus norvegicus OX=10116 GN=Ngly1 PE=2 SV=2
Q5ZJM3	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Gallus gallus OX=9031 GN=NGLY1 PE=2 SV=1
Q9JI78	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Mus musculus OX=10090 GN=Ngly1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002148 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01841 all species →	Transglut_core	Transglutaminase-like superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002931 all species →	Domain	Transglutaminase-like	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR050883 all species →	Family	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12143 all species →	PEPTIDE N-GLYCANASE PNGASE -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000224 all species →	Molecular Function	peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006515 all species →	Biological Process	protein quality control for misfolded or incompletely synthesized proteins	Interproscan
GO:0006516 all species →	Biological Process	glycoprotein catabolic process	Interproscan
GO:0006517 all species →	Biological Process	protein deglycosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008884-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008884-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

34.9Max TPM

11.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.48	21.33
polyp at pH7 6	18	17	10.99	17.94
coral polyp · control treatment	16	16	14.54	29.09
coral polyp · oil and dispersant treatment	16	15	8.71	16.77
coral polyp · oil treatment	16	16	11.07	18.31
coral polyp · dispersant treatment	16	16	14.09	34.90
Polyp	10	8	6.42	14.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.33
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.23
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.05
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.76
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.02
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.06
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.04
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.58
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.06
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.64
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.52
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.79
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.36
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.99
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.69
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.22
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.25
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.94
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.47
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.34
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.25
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.13
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.79
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.74
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.60
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.48
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.30
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.62
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.18
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.97
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.96
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.81
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.52
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.09
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.45
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.66
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.08
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.28
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.89
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.71
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.44
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.15
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.55
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.33
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.94
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.90
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.84
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.40
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.77
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.71
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.50
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.74
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.40
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.86
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.68
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.65
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.54
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.09
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.27
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.93
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.46
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.94
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.31
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.88
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.11
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.53
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.27
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.81
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.68
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.29
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.27
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.78
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.53
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.92
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.81
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.78
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.67
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.49
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.90
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.68
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.95
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.76
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.51
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.38
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.18
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.06
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.86
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.77
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.69
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.96
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.03
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.84
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.98
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.98
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.77
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.38
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.51
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.01
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.18
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.63
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.01
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.72
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.