Gene detail

Detailed information of OS493_008885-T1 in Lophelia pertusa

Genomic Location: scaffold_21:1042823...1048960
NR annotation: KAJ7380427.1, Peptide-N(4)-(N-acetyl-beta- glucosaminyl)asparagine amidase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JI78	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Mus musculus OX=10090 GN=Ngly1 PE=1 SV=2
Q5XI55	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Rattus norvegicus OX=10116 GN=Ngly1 PE=2 SV=2
Q96IV0	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Homo sapiens OX=9606 GN=NGLY1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002148 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04721 all species →	PAW	PNGase C-terminal domain, mannose-binding module PAW	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038680 all species →	Homologous_superfamily	PAW domain superfamily	Interproscan
IPR006588 all species →	Domain	Peptide N glycanase, PAW domain	Interproscan
IPR050883 all species →	Family	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12143 all species →	PEPTIDE N-GLYCANASE PNGASE -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006516 all species →	Biological Process	glycoprotein catabolic process	Interproscan
GO:0000224 all species →	Molecular Function	peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006515 all species →	Biological Process	protein quality control for misfolded or incompletely synthesized proteins	Interproscan
GO:0006517 all species →	Biological Process	protein deglycosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008885-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008885-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

119.2Max TPM

41.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	25.67	41.26
polyp at pH7 6	18	18	26.86	39.33
coral polyp · control treatment	16	16	50.06	67.87
coral polyp · oil and dispersant treatment	16	16	65.85	119.24
coral polyp · oil treatment	16	16	46.62	65.94
coral polyp · dispersant treatment	16	16	52.68	108.95
Polyp	10	9	14.17	26.79

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.26
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.79
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.65
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.56
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.19
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.30
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.77
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.68
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.18
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.38
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.42
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.81
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.76
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.26
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.08
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.98
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.06
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.88
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.33
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.42
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.52
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.47
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.48
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.19
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.54
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.39
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.01
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.97
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.61
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.09
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.53
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.03
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.31
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.09
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.94
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.52
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.87
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.86
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.72
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.20
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.17
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.06
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.98
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.21
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.56
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.36
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.15
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.52
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.64
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.23
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.77
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.69
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	119.24
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.40
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.09
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.14
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.14
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.70
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.24
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.94
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.89
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.60
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.23
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.84
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.86
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.02
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.31
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.96
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.94
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.90
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.99
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.68
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.76
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.87
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.12
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.87
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.84
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.04
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.60
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.14
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.22
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.59
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.20
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	108.95
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.99
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.49
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.97
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.42
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.11
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.93
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.20
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.91
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.40
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.69
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.90
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.86
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.45
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	26.79
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.46
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	20.77
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	19.41
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.71
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.78
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.52
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.93
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.36
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.