Gene detail

Detailed information of OS493_008886-T1 in Lophelia pertusa

Genomic Location: scaffold_21:1049034...1059050
NR annotation: KAJ7380428.1, Peptide-N(4)-(N-acetyl-beta- glucosaminyl)asparagine amidase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q503I8	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Danio rerio OX=7955 GN=ngly1 PE=2 SV=1
Q96IV0	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Homo sapiens OX=9606 GN=NGLY1 PE=1 SV=1
Q4R6F3	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Macaca fascicularis OX=9541 GN=NGLY1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002148 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09409 all species →	PUB	PUB domain	Domain	Interproscan
PF00085 all species →	Thioredoxin	Thioredoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018997 all species →	Domain	PUB domain	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR036339 all species →	Homologous_superfamily	PUB-like domain superfamily	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46115 all species →	THIOREDOXIN-LIKE PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0015035 all species →	Molecular Function	protein-disulfide reductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008886-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008886-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

80.4Max TPM

25.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.28	27.46
polyp at pH7 6	18	17	14.09	22.60
coral polyp · control treatment	16	16	30.54	52.71
coral polyp · oil and dispersant treatment	16	16	41.97	62.86
coral polyp · oil treatment	16	16	26.37	35.07
coral polyp · dispersant treatment	16	16	39.35	80.43
Polyp	10	9	5.94	11.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.46
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.87
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.40
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.80
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.75
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.63
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.21
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.81
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.34
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.10
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.36
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.92
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.90
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.75
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.59
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.85
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.60
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.21
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.49
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.79
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.59
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.46
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.19
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.88
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.06
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.73
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.33
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.83
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.22
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.42
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.58
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.58
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.57
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.71
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.62
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.69
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.62
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.03
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.73
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.15
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.11
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.96
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.69
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.35
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.68
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.88
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.10
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.61
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.68
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.86
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.22
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.08
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.76
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.42
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.44
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.04
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.80
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.47
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.83
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.22
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.63
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.18
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.72
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.21
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.57
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.07
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.56
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.43
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.21
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.13
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.76
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.72
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.30
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.60
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.20
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.35
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.45
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.50
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.39
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.19
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.43
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.34
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.45
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.52
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.16
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.00
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.25
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.92
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.07
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.13
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.99
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.36
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.97
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.87
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.01
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.20
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.90
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.36
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.40
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.51
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.61
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.67
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.75
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.