Gene detail

Detailed information of OS493_008896-T1 in Lophelia pertusa

Genomic Location: scaffold_21:1236925...1247124
NR annotation: KAJ7380438.1, Gly-Xaa carboxypeptidase [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91293	Carbamoyl-phosphate synthase [ammonia], mitochondrial OS=Aquarana catesbeiana OX=8400 PE=2 SV=1
P31327	Carbamoyl-phosphate synthase [ammonia], mitochondrial OS=Homo sapiens OX=9606 GN=CPS1 PE=1 SV=2
Q8C196	Carbamoyl-phosphate synthase [ammonia], mitochondrial OS=Mus musculus OX=10090 GN=Cps1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001107 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00988 all species →	CPSase_sm_chain	Carbamoyl-phosphate synthase small chain, CPSase domain	Domain	Interproscan
PF00117 all species →	GATase	Glutamine amidotransferase class-I	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002474 all species →	Domain	Carbamoyl-phosphate synthase small subunit, N-terminal domain	Interproscan
IPR036480 all species →	Homologous_superfamily	Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily	Interproscan
IPR035686 all species →	Domain	Carbamoyl-phosphate synthase small subunit, GATase1 domain	Interproscan
IPR017926 all species →	Domain	Glutamine amidotransferase	Interproscan
IPR029062 all species →	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11405 all species →	CARBAMOYLTRANSFERASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004088 all species →	Molecular Function	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005951 all species →	Cellular Component	carbamoyl-phosphate synthase complex	Interproscan
GO:0006526 all species →	Biological Process	L-arginine biosynthetic process	Interproscan
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01956	carA, CPA1; carbamoyl-phosphate synthase small subunit	EC:6.3.5.5	Alanine, aspartate and glutamate metabolism	ko00250	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_008896-T1 global co-expression network