Gene detail

Detailed information of OS493_008899-T1 in Lophelia pertusa

Genomic Location: scaffold_21:1282152...1294882
NR annotation: KAJ7380441.1, Histone-lysine N-methyltransferase ezh1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08BS4	Histone-lysine N-methyltransferase EZH2 OS=Danio rerio OX=7955 GN=ezh2 PE=2 SV=1
Q61188	Histone-lysine N-methyltransferase EZH2 OS=Mus musculus OX=10090 GN=Ezh2 PE=1 SV=2
Q15910	Histone-lysine N-methyltransferase EZH2 OS=Homo sapiens OX=9606 GN=EZH2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004328 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21358 all species →	Ezh2_MCSS	Ezh2, MCSS domain	Domain	Interproscan
PF18118 all species →	PRC2_HTH_1	Polycomb repressive complex 2 tri-helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045318 all species →	Family	Histone-lysine N-methyltransferase EZH1/2-like	Interproscan
IPR048358 all species →	Domain	EZH1/2, MCSS domain	Interproscan
IPR041343 all species →	Domain	Polycomb repressive complex 2 subunit EZH1/EZH2, tri-helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45747 all species →	HISTONE-LYSINE N-METHYLTRANSFERASE E(Z)	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0031507 all species →	Biological Process	heterochromatin formation	Interproscan
GO:0035098 all species →	Cellular Component	ESC/E(Z) complex	Interproscan
GO:0042054 all species →	Molecular Function	histone methyltransferase activity	Interproscan
GO:0046976 all species →	Molecular Function	histone H3K27 methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008899-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008899-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

17.3Max TPM

7.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.67	11.72
polyp at pH7 6	18	18	7.46	11.92
coral polyp · control treatment	16	16	8.10	15.91
coral polyp · oil and dispersant treatment	16	16	6.27	12.86
coral polyp · oil treatment	16	16	8.28	17.26
coral polyp · dispersant treatment	16	16	6.45	14.12
Polyp	10	9	7.15	12.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.72
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.54
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.82
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.19
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.04
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.58
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.21
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.94
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.80
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.65
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.51
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.08
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.45
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.57
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.50
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.15
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.75
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.47
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.92
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.91
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.53
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.46
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.42
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.62
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.92
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.49
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.86
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.25
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.09
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.87
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.37
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.11
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.53
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.05
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.39
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.91
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.93
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.77
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.46
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.01
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.79
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.15
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.77
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.46
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.40
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.97
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.03
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.30
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.88
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.83
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.86
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.35
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.72
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.20
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.14
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.12
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.77
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.23
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.50
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.19
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.83
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.03
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.66
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.49
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.29
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.92
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.26
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.47
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.39
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.78
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.28
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.60
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.37
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.46
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.41
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.30
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.71
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.09
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.04
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.86
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.61
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.12
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.72
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.23
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.04
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.04
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.60
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.03
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.16
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.56
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.12
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.02
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.90
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.74
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.70
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.24
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.93
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.62
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.52
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.48
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.29
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.90
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.81
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.06
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.94
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.89
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.