Gene detail

Detailed information of OS493_008900-T1 in Lophelia pertusa

Genomic Location: scaffold_21:1296135...1299099
NR annotation: KAJ7380442.1, Histone-lysine N-methyltransferase ezh1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4V863	Histone-lysine N-methyltransferase EZH2 OS=Xenopus laevis OX=8355 GN=ezh2-b PE=2 SV=1
Q08BS4	Histone-lysine N-methyltransferase EZH2 OS=Danio rerio OX=7955 GN=ezh2 PE=2 SV=1
Q15910	Histone-lysine N-methyltransferase EZH2 OS=Homo sapiens OX=9606 GN=EZH2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004328 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00856 all species →	SET	SET domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR045318 all species →	Family	Histone-lysine N-methyltransferase EZH1/2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45747 all species →	HISTONE-LYSINE N-METHYLTRANSFERASE E(Z)	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0031507 all species →	Biological Process	heterochromatin formation	Interproscan
GO:0035098 all species →	Cellular Component	ESC/E(Z) complex	Interproscan
GO:0042054 all species →	Molecular Function	histone methyltransferase activity	Interproscan
GO:0046976 all species →	Molecular Function	histone H3K27 methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07117	K07117; uncharacterized protein	-	Function unknown	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008900-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

151.9Max TPM

23.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	25.97	55.70
polyp at pH7 6	18	18	28.67	54.75
coral polyp · control treatment	16	16	18.22	31.98
coral polyp · oil and dispersant treatment	16	16	14.95	46.22
coral polyp · oil treatment	16	16	20.70	50.73
coral polyp · dispersant treatment	16	16	11.80	30.55
Polyp	10	10	57.76	151.85

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.70
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.89
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.43
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.96
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.37
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.04
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.82
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.65
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.05
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.18
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.99
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.80
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.74
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.99
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.56
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.93
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.59
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.83
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.19
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.60
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.46
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.87
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.02
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.85
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.86
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.69
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.99
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.28
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.64
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.41
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.41
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.92
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.06
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.94
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.98
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.99
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.26
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.75
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.90
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.22
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.01
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.28
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.48
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.27
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.90
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.24
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.85
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.81
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.22
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.57
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.75
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.69
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.39
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.79
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.51
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.30
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.04
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.33
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.27
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.17
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.92
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.39
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.17
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.69
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.73
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.27
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.79
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.34
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.67
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.61
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.82
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.61
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.33
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.95
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.24
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.33
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.69
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.55
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.80
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.54
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.55
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.81
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.59
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.92
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.59
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.46
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.52
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.00
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.67
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.42
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.77
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.13
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.31
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.74
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.61
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.66
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	151.85
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	81.57
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	76.36
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	65.16
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	44.51
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	43.28
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	40.90
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	37.17
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	22.32
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.52

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.