Gene detail

Detailed information of OS493_008924-T1 in Lophelia pertusa

Genomic Location: scaffold_21:1686070...1693877
NR annotation: KAJ7380463.1, hypothetical protein OS493_008924 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9GZT9	Egl nine homolog 1 OS=Homo sapiens OX=9606 GN=EGLN1 PE=1 SV=1
P59722	Egl nine homolog 1 (Fragment) OS=Rattus norvegicus OX=10116 GN=Egln1 PE=2 SV=2
Q91YE3	Egl nine homolog 1 OS=Mus musculus OX=10090 GN=Egln1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001316 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13640 all species →	2OG-FeII_Oxy_3	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002893 all species →	Domain	Zinc finger, MYND-type	Interproscan
IPR006620 all species →	Domain	Prolyl 4-hydroxylase, alpha subunit	Interproscan
IPR044862 all species →	Domain	Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain	Interproscan
IPR051559 all species →	Family	Hypoxia-inducible factor prolyl hydroxylases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12907 all species →	EGL NINE HOMOLOG-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0031418 all species →	Molecular Function	L-ascorbic acid binding	Interproscan
GO:0008198 all species →	Molecular Function	ferrous iron binding	Interproscan
GO:0031543 all species →	Molecular Function	peptidyl-proline dioxygenase activity	Interproscan
GO:0071456 all species →	Biological Process	cellular response to hypoxia	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008924-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_008924-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

527.0Max TPM

95.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	31.26	48.84
polyp at pH7 6	18	18	44.06	65.26
coral polyp · control treatment	16	16	111.13	377.03
coral polyp · oil and dispersant treatment	16	16	133.69	495.84
coral polyp · oil treatment	16	16	100.74	234.14
coral polyp · dispersant treatment	16	16	212.69	527.02
Polyp	10	9	18.58	30.28

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.84
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.97
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.98
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.64
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.28
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.91
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.89
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.99
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.91
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.99
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.20
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.82
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.37
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.94
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.81
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.50
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.99
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.67
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.26
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.62
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.32
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.54
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.98
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.14
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.29
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.26
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.21
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.64
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.01
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.19
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.68
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.13
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.07
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.74
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.13
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.91
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	377.03
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	176.65
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	174.82
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	147.36
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	124.95
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	123.66
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.68
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.85
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.81
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.10
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.44
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.91
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.49
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.08
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.64
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.61
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	495.84
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	168.13
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	163.82
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	162.64
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	125.43
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	123.48
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	115.27
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.58
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	99.74
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	92.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.88
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	83.61
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.62
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.33
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.85
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.85
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	234.14
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	152.83
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	132.30
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	129.26
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	116.40
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	109.81
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	92.34
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	89.49
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	89.06
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	85.81
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	85.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	80.20
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.81
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.41
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.94
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.64
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	527.02
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	467.04
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	430.93
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	310.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	239.05
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	216.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	172.01
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	166.86
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	151.73
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	138.76
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	135.36
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	125.33
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	112.67
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	89.01
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.70
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	30.28
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	27.53
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	24.61
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.88
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	19.97
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	17.64
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.46
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	14.91
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.53
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.