Detailed information of OS493_008937-T1 in Lophelia pertusa

Genomic Location: scaffold_21:1824893...1831102
NR annotation: KAJ7380476.1, Hypoxia-inducible factor 1-alpha [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q309Z6Hypoxia-inducible factor 1-alpha OS=Eospalax fontanierii baileyi OX=146132 GN=HIF1A PE=2 SV=1
Q0PGG7Hypoxia-inducible factor 1-alpha OS=Bos mutus grunniens OX=30521 GN=HIF1A PE=2 SV=1
Q9XTA5Hypoxia-inducible factor 1-alpha OS=Bos taurus OX=9913 GN=HIF1A PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004064 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00989
all species →		PASPAS foldDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011598
all species →		DomainMyc-type, basic helix-loop-helix (bHLH) domainInterproscan
IPR036638
all species →		Homologous_superfamilyHelix-loop-helix DNA-binding domain superfamilyInterproscan
IPR000014
all species →		DomainPAS domainInterproscan
IPR035965
all species →		Homologous_superfamilyPAS domain superfamilyInterproscan
IPR013767
all species →		DomainPAS foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23043
all species →		HYPOXIA-INDUCIBLE FACTOR 1 ALPHAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046983
all species →		Molecular Functionprotein dimerization activityInterproscan
GO:0000977
all species →		Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_008937-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_008937-T1 global co-expression network
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