Gene detail

Detailed information of OS493_008982-T1 in Lophelia pertusa

Genomic Location: scaffold_21:2376050...2404792
NR annotation: KAJ7380517.1, Neurobeachin-like protein 1 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_008982-T1

ATGGCGGATGAATTGGAGGAGGAGAGATTAGGAGACCAACACAATGACAAAATATCTCTTAGCCCGGAGCAAATCTGGAGTTACCTCAACAGCGGGGAGTGGTCAGCCACTGACATTGTCCCAGATACTACGAGAAGCCTTTTTAGATTTCTGGAAGATCACACCAATAGTGAACCACTGAGCTCAAGCAATGACGCAGTTACTATAACCTCACAGAATCAGGAGCATGAACAAGCAGTTAAATGTCTCGTCAAAATCATTCATCTTATTCATCGTTCAAGTCTAAAAAACCAACATCAATGTCTTGTAGATACTCCTTCATTATTGAAGAGGTTTCTGGAAATTGTACATCTCAGAGGTTCACAAGCTTGTTTTTCCAGGACATTGTTCATGCTTGATGTAATTCCTGAGATCCTGAATTGCGAGGACTCTGCCGTGCTTCAGGCAGTGTTTGTTGGAGTTGGATGTTTTGAGCATATCATTTCTGTTCTGGACTATGAGTGCCAGAATGCAGACGTACAGAACACATTGTACAAGAGTTGTGTGCAGGCAATTCAGAGCATCATGTTTGCGTCACCTGCTGCCAAGGAAGTGTTCAAAGATAGTGTGAGCTTTGAGAAGTTTTGTAGTTATCTAAAAAAACTTCAGTCTCCCTCTAAAGAATTCATTCAACTGCTATTTAATTGGGTAGTAGAAGGGATGTACAGTGAAGGAAATAAAGTAATAAACAATGTTGATGTTATCTTGCTGCTTCTTGATTGGCTTCCTTCTTTATCAGTGAACAACAAAAGGTGTGTAACAGAATCAATCAGACACCTGTGCAAGTTTTCTATGCATAATGCCATGCTGTGTAGCACCAGTGGAGTGTTTAGTAAAGTTGTGATGCTTTTGGAGTCTGATGCACAGAATATTGACAACGTCTGGGCAGAGTCCCTGATTGGTATCCTGGAAGCCATCGGTGCACATTCTGTAACTTCAAGTGAACTCAAACAGATGATTGGTCTCTTCACACCACTCGCGAATGGTGAACAGGTTCCATTTGTCCACAGAGTGCTACAAGCTCTCGTGAAAATGTCATTCAGTAGCAGCCGCTTGAGAGCAAAACATTTCTTTGACCTTAACCACCCCTCTGCTGGTATTTCAGTACCAGGGATGCAAAAATGGCCAGGACACAGCTTTACATTTCATGCCTGGGTTTGCCTGGAGGCGGTTGAAATCAAAGAAAGGAATAATTCAAGTGTCGAAAGAAAGATATTTCACTATCGGCGGAATCTCTACAGCTTTTTCACTACTTCTGGAGTTGGGTTAGAAGCATTTTTCTCTTCTACTGGGCATCTAGTCGTGGCCGTGTGTAACAGAAAGGAATACACAACTGTAACTGTACCAGTTTGTCAACTATGTGATCAGACATGGCATTCTGTGGCGGTTGCACATCTTCCCTCTCGTCGTCCTTTCGGTCAAAGCACTTTATCTGTGCATGTTGATGATCTTGCCAGCTGTCAGATTGGGTCTGGCGGCCTTCAGACCATCTGCTCGCCCCGGGACCTGCAGGACGTTAAGGGTGGTCAGCGGAAGTTTCACTTCAGCTTTCCAGGGCTATCTGAAACCACCTCACCTCACTGTAACACCATTGCTGCTGGATCACAGGATTATGTGTGGGGGATCCCAACATCTTTACAGGGCCAGTTAGGTCCCGTATGTGTGTTTAGTGAAGGGCTGCAGGAGAATTACATCACTACGTTGCATGCTGCAGGTCCAAATGACCTAAACCTGTTTCAGCCAGTTGATGCTGCCAGTTCTACACAGCTCACTCTCAATGACTTGGCCCTTAAACTGGTTCTTTTCTACAATTCAAAGGCTGGTCGTGACCATATGTGCAGTGATTTGACGCCTGTACAACCAGGTCGTGTTCAACTGGATGGCAGGTTAACTGGCCACAGATGTACCACCTGGGACATGAAGGACGTTCTTCGCTGTATCGGCGGCATGAAGATATTTTTGCCTTTATTGGAGCAGATCTCTTATTTTGATCCGCCAAAGCATTCACATGTTAGCAGCAATGAACAACTGGAAGTGTTTGATTTGGAGCAGTCAGGCGAAAGCAATGATAGGCCCCTCAGCTCCACTTCAGAAGAGGAAGCCAGCCAAACAGAATCCTCTGAGCCTGCAAGCAGTTTGTCCGCCACACTGCTAGTGCCAGCCCTCCGTGCGCAGAACAGGAAGAGGAATGGGTCTACATCGACGATAACTACGACCTTCGTTTTTACAAGAAGGAAATTTACAGACTCTGCAAGTCCACACAACTGTAATGGTGTTGCCTTGTTCATGTTTCTGCTTTTAAGTATTTAA

Transcript

OS493_008982-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZS30	Neurobeachin-like protein 1 OS=Homo sapiens OX=9606 GN=NBEAL1 PE=1 SV=3
E7FAW3	Neurobeachin-like protein 2 OS=Danio rerio OX=7955 GN=nbeal2 PE=1 SV=1
Q6ZQA0	Neurobeachin-like protein 2 OS=Mus musculus OX=10090 GN=Nbeal2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002886 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20425 all species →	Neurobeachin	Neurobeachin alpha solenoid region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR046852 all species →	Domain	Neurobeachin, alpha-solenoid region	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR050865 all species →	Family	BEACH Domain-Containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13743 all species →	BEIGE/BEACH-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008104 all species →	Biological Process	protein localization	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_008982-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_008982-T1 global co-expression network