Gene detail

Detailed information of OS493_009000-T1 in Lophelia pertusa

Genomic Location: scaffold_21:2592534...2634240
NR annotation: KAJ7380534.1, hypothetical protein OS493_009000 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P31430	Dipeptidase 1 OS=Rattus norvegicus OX=10116 GN=Dpep1 PE=2 SV=2
Q3SZM7	Dipeptidase 1 OS=Bos taurus OX=9913 GN=DPEP1 PE=2 SV=1
P22412	Dipeptidase 1 OS=Sus scrofa OX=9823 GN=DPEP1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002428 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01244 all species →	Peptidase_M19	Membrane dipeptidase (Peptidase family M19)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008257 all species →	Family	Peptidase M19	Interproscan
IPR000180 all species →	Active_site	Membrane dipeptidase, active site	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10443 all species →	MICROSOMAL DIPEPTIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0070573 all species →	Molecular Function	metallodipeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01273	DPEP; membrane dipeptidase	EC:3.4.13.19	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009000-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

67.4Max TPM

22.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	31.19	46.38
polyp at pH7 6	18	18	25.84	47.77
coral polyp · control treatment	16	16	19.72	41.20
coral polyp · oil and dispersant treatment	16	16	17.27	45.14
coral polyp · oil treatment	16	16	22.41	67.37
coral polyp · dispersant treatment	16	16	21.07	62.54
Polyp	10	9	18.11	52.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.38
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.84
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.04
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.90
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.69
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.52
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.84
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.33
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.69
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.45
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.70
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.17
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.99
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.22
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.24
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.67
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.67
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.77
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.58
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.95
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.70
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.29
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.14
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.38
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.82
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.94
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.82
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.73
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.55
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.78
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.19
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.40
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.71
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.69
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.66
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.20
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.71
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.90
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.48
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.33
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.73
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.69
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.85
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.38
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.42
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.60
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.12
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.37
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.86
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.32
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.50
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.36
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.09
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.51
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.55
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.68
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.14
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.97
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.22
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.58
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.26
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.09
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.53
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.51
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.04
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.37
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.14
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.46
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.62
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.97
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.15
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.83
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.16
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.68
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.63
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.82
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.94
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.61
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.07
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.35
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.77
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.54
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.93
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.86
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.44
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.41
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.11
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.20
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.80
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.89
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.79
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.74
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.49
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.76
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.87
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	52.94
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	35.93
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	25.68
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	22.96
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	20.69
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.80
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.82
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.56
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.75
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.