Gene detail

Detailed information of OS493_009001-T1 in Lophelia pertusa

Genomic Location: scaffold_21:2634645...2648197
NR annotation: KAJ7380535.1, hypothetical protein OS493_009001 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P43477	Dipeptidase 1 OS=Ovis aries OX=9940 GN=DPEP1 PE=1 SV=1
P16444	Dipeptidase 1 OS=Homo sapiens OX=9606 GN=DPEP1 PE=1 SV=3
Q3SZM7	Dipeptidase 1 OS=Bos taurus OX=9913 GN=DPEP1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002428 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01244 all species →	Peptidase_M19	Membrane dipeptidase (Peptidase family M19)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008257 all species →	Family	Peptidase M19	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10443 all species →	MICROSOMAL DIPEPTIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0070573 all species →	Molecular Function	metallodipeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01273	DPEP; membrane dipeptidase	EC:3.4.13.19	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009001-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

122.8Max TPM

52.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	91.26	122.75
polyp at pH7 6	18	18	76.15	106.65
coral polyp · control treatment	16	16	36.48	76.96
coral polyp · oil and dispersant treatment	16	16	28.89	71.55
coral polyp · oil treatment	16	16	42.63	109.00
coral polyp · dispersant treatment	16	16	32.95	78.14
Polyp	10	10	50.50	112.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	122.75
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	117.41
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	107.54
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	106.57
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	105.20
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	104.64
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	103.90
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	103.72
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	90.66
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	88.12
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.68
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	83.92
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.08
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.62
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.53
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.14
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.72
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.55
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	106.65
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	106.15
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	105.62
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	103.31
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	101.04
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	97.24
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	95.02
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	88.49
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	88.42
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.91
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.14
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.95
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.85
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.95
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.81
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.54
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.36
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.32
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.96
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.99
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.02
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.27
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.70
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.50
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.72
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.68
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.02
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.79
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.83
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.40
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.53
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.55
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.46
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.33
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.55
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.21
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.56
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.54
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.08
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.83
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.61
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.83
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.49
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.46
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.82
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.10
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.60
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.86
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.83
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.78
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	109.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.56
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.84
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.30
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.37
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.58
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.09
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.79
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.73
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.02
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.95
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.54
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.82
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.72
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.46
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.31
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.14
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.02
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.95
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.06
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.10
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.49
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.80
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.88
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.14
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.16
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.47
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.58
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.66
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.84
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.05
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	112.32
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	91.85
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	69.13
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	64.37
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	62.47
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	47.59
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	36.21
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.31
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.95
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.76

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.