Gene detail

Detailed information of OS493_009100-T1 in Lophelia pertusa

Genomic Location: scaffold_22:132124...140567
NR annotation: KAJ7373779.1, hypothetical protein OS493_009100 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P24552	D-amino-acid oxidase OS=Fusarium vanettenii OX=2747968 PE=1 SV=1
A5U3S4	D-amino-acid oxidase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) OX=419947 GN=dao PE=2 SV=1
P9WP26	D-amino-acid oxidase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=dao PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001368 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01266 all species →	DAO	FAD dependent oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006076 all species →	Domain	FAD dependent oxidoreductase	Interproscan
IPR023209 all species →	Family	D-amino-acid oxidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11530 all species →	D-AMINO ACID OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003884 all species →	Molecular Function	D-amino-acid oxidase activity	Interproscan
GO:0046416 all species →	Biological Process	D-amino acid metabolic process	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019478 all species →	Biological Process	D-amino acid catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009100-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009100-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

32.9Max TPM

9.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.75	21.43
polyp at pH7 6	18	18	12.42	23.30
coral polyp · control treatment	16	16	9.73	17.05
coral polyp · oil and dispersant treatment	16	16	6.06	19.31
coral polyp · oil treatment	16	16	7.33	16.19
coral polyp · dispersant treatment	16	16	6.37	17.15
Polyp	10	10	15.68	32.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.43
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.76
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.17
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.81
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.95
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.45
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.95
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.81
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.38
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.18
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.65
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.63
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.60
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.59
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.20
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.92
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.30
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.71
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.91
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.62
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.11
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.50
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.48
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.64
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.54
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.19
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.07
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.46
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.63
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.42
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.92
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.05
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.53
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.01
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.69
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.55
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.81
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.73
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.21
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.60
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.01
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.33
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.08
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.93
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.52
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.36
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.31
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.32
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.91
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.70
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.50
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.26
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.24
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.19
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.72
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.91
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.80
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.75
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.55
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.36
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.34
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.12
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.19
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.02
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.90
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.69
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.88
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.51
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.44
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.84
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.81
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.47
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.27
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.27
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.16
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.76
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.11
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.89
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.15
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.33
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.96
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.86
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.99
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.54
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.29
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.97
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.90
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.78
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.65
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.49
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.08
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.23
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.12
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	32.88
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	29.30
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	18.38
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.60
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	15.04
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.50
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.67
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.17
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.28
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.96

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.