Gene detail

Detailed information of OS493_009109-T1 in Lophelia pertusa

Genomic Location: scaffold_22:190586...199283
NR annotation: KAJ7373787.1, Protein kintoun [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0P4V4	Protein kintoun OS=Xenopus tropicalis OX=8364 GN=dnaaf2 PE=2 SV=1
B1H1W9	Protein kintoun OS=Xenopus laevis OX=8355 GN=dnaaf2 PE=2 SV=1
B4J4Y2	Protein kintoun OS=Drosophila grimshawi OX=7222 GN=Nop17l PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004810 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18201 all species →	PIH1_CS	PIH1 CS-like domain	Domain	Interproscan
PF08190 all species →	PIH1	PIH1 N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041442 all species →	Domain	PIH1D1/2/3, CS-like domain	Interproscan
IPR034727 all species →	Family	Kintoun	Interproscan
IPR050734 all species →	Family	PIH1 family, Kintoun subfamily	Interproscan
IPR012981 all species →	Domain	PIH1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22997 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0070286 all species →	Biological Process	axonemal dynein complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009109-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009109-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

29.8Max TPM

12.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.54	22.98
polyp at pH7 6	18	18	13.21	23.31
coral polyp · control treatment	16	16	13.52	29.76
coral polyp · oil and dispersant treatment	16	16	9.92	19.51
coral polyp · oil treatment	16	16	13.69	27.07
coral polyp · dispersant treatment	16	16	6.82	13.34
Polyp	10	10	12.19	16.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.98
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.72
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.49
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.14
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.97
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.64
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.02
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.96
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.89
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.57
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.51
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.38
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.93
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.09
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.87
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.35
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.94
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.31
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.31
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.12
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.91
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.70
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.57
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.38
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.37
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.14
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.75
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.23
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.90
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.63
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.05
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.76
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.50
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.12
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.02
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.76
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.83
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.25
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.47
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.84
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.88
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.18
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.05
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.15
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.85
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.50
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.31
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.20
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.04
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.33
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.75
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.51
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.81
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.83
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.30
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.30
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.46
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.15
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.39
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.25
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.25
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.79
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.36
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.04
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.67
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.49
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.07
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.32
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.02
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.26
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.92
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.95
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.94
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.64
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.26
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.22
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.78
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.73
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.61
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.58
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.34
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.71
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.97
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.55
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.55
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.14
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.02
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.90
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.54
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.27
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.16
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.65
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.51
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.29
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.54
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.65
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.53
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.30
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.21
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.33
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.17
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.06
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.26

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.