Gene detail

Detailed information of OS493_009155-T1 in Lophelia pertusa

Genomic Location: scaffold_22:536719...539077
NR annotation: KAJ7373833.1, Sortilin- receptor [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q98930	Sortilin-related receptor (Fragment) OS=Gallus gallus OX=9031 GN=SORL1 PE=2 SV=1
Q92673	Sortilin-related receptor OS=Homo sapiens OX=9606 GN=SORL1 PE=1 SV=2
O88307	Sortilin-related receptor OS=Mus musculus OX=10090 GN=Sorl1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000636 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15901 all species →	Sortilin_C	Sortilin, neurotensin receptor 3, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031777 all species →	Domain	Sortilin, C-terminal	Interproscan
IPR050310 all species →	Family	VPS10-related sortilin family receptors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12106 all species →	SORTILIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006892 all species →	Biological Process	post-Golgi vesicle-mediated transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009155-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009155-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

105.3Max TPM

31.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	16.06	26.16
polyp at pH7 6	18	17	21.14	41.07
coral polyp · control treatment	16	16	42.87	105.32
coral polyp · oil and dispersant treatment	16	16	55.79	96.24
coral polyp · oil treatment	16	16	32.86	82.30
coral polyp · dispersant treatment	16	16	40.31	79.14
Polyp	10	8	5.61	14.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.16
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.02
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.72
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.97
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.41
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.64
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.05
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.90
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.59
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.42
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.05
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.82
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.01
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.63
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.17
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.37
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.20
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.07
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.54
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.05
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.09
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.31
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.08
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.75
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.07
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.19
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.19
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.04
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.80
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.12
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.69
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.85
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.95
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	105.32
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.96
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.99
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.96
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.12
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.74
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.50
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.34
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.86
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.85
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.47
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.81
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.90
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.20
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.59
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.23
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	96.24
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.21
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.98
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.11
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.11
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.08
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.40
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.79
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.06
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.01
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.35
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.19
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.08
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.38
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.29
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.30
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.41
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.23
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.98
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.99
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.45
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.37
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.79
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.43
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.41
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.53
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.96
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.58
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.13
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.47
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.81
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.14
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.46
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.64
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.08
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.81
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.89
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.43
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.14
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.32
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.09
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.64
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.20
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.89
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.38
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.15
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.79
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.43
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.73
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.53
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.22
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.12
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.02
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.58
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.43
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.