Gene detail

Detailed information of OS493_009163-T1 in Lophelia pertusa

Genomic Location: scaffold_22:581883...584994
NR annotation: KAJ7373841.1, hypothetical protein OS493_009163 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q503V9	Uridylate-specific endoribonuclease B OS=Danio rerio OX=7955 GN=endoub PE=2 SV=1
Q8JFY9	Poly(U)-specific endoribonuclease-A OS=Xenopus laevis OX=8355 GN=endou-a PE=1 SV=1
B1WBB4	Poly(U)-specific endoribonuclease-B OS=Xenopus laevis OX=8355 GN=endou-b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001018 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09412 all species →	XendoU	Endoribonuclease XendoU	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018998 all species →	Domain	EndoU ribonuclease, C-terminal	Interproscan
IPR037227 all species →	Homologous_superfamily	Endoribonuclease EndoU-like	Interproscan
IPR039787 all species →	Family	Poly(U)-specific endoribonuclease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12439 all species →	PLACENTAL PROTEIN 11-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14648	ENDOU, PP11; poly(U)-specific endoribonuclease	EC:3.1.-.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009163-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

280.6Max TPM

90.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	77.47	153.43
polyp at pH7 6	18	18	82.72	105.41
coral polyp · control treatment	16	16	106.90	206.79
coral polyp · oil and dispersant treatment	16	16	88.69	159.37
coral polyp · oil treatment	16	16	109.91	198.65
coral polyp · dispersant treatment	16	16	90.90	280.64
Polyp	10	10	76.94	202.99

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	153.43
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	131.83
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	108.24
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	95.45
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	94.32
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	91.73
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.60
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.82
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.77
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.61
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.48
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.40
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.20
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.32
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.69
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.29
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.22
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.98
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	105.41
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	102.13
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	99.70
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	93.17
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	92.89
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	89.72
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.44
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.24
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	85.62
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.49
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.90
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.81
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.26
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.65
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.91
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.87
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.10
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.61
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	206.79
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	202.08
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	154.01
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	146.89
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	138.94
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	131.91
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	119.78
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	90.18
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.76
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.23
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.69
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.29
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.98
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.78
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.81
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.23
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	159.37
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	146.03
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	141.67
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	120.94
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	118.01
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.70
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.86
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.52
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.72
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.03
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.41
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.04
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.46
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.54
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.61
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.19
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	198.65
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	191.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	163.43
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	150.79
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	148.99
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	138.95
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	118.06
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	111.72
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	103.40
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	83.50
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.89
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.64
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.25
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.13
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.19
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.87
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	280.64
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	130.29
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	113.66
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	107.48
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	107.15
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	88.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.70
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.70
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	76.91
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.43
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.94
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.16
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.72
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.85
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.07
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.06
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	202.99
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	88.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	84.94
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	74.35
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	73.19
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	55.31
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	52.49
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	48.81
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	47.27
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	41.75

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.