Gene detail

Detailed information of OS493_009180-T1 in Lophelia pertusa

Genomic Location: scaffold_22:717558...727430
NR annotation: KAJ7373858.1, Nuclear receptor-binding protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UHY1	Nuclear receptor-binding protein OS=Homo sapiens OX=9606 GN=NRBP1 PE=1 SV=1
Q4R8X0	Nuclear receptor-binding protein OS=Macaca fascicularis OX=9541 GN=NRBP1 PE=2 SV=1
Q5RBH9	Nuclear receptor-binding protein OS=Pongo abelii OX=9601 GN=NRBP1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003093 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR050588 all species →	Family	With No Lysine (K) Ser/Thr Protein Kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13902 all species →	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08875	NRBP; nuclear receptor-binding protein	-	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009180-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

58.4Max TPM

23.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	22.59	32.69
polyp at pH7 6	18	18	22.59	30.37
coral polyp · control treatment	16	16	31.04	58.42
coral polyp · oil and dispersant treatment	16	16	23.87	36.86
coral polyp · oil treatment	16	16	27.53	38.01
coral polyp · dispersant treatment	16	16	19.27	35.88
Polyp	10	10	14.04	25.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.69
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.81
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.92
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.49
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.07
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.35
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.55
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.16
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.25
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.11
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.43
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.24
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.95
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.57
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.49
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.79
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.26
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.49
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.37
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.15
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.65
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.16
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.48
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.60
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.39
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.99
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.99
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.82
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.80
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.25
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.11
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.85
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.11
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.93
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.86
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.01
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.42
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.25
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.62
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.73
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.67
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.12
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.89
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.82
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.97
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.66
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.82
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.56
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.94
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.23
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.95
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.86
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.46
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.28
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.91
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.51
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.52
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.22
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.80
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.65
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.93
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.68
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.03
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.79
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.24
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.26
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.80
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.01
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.15
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.32
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.80
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.98
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.50
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.04
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.92
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.93
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.90
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.12
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.35
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.00
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.98
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.88
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.40
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.29
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.36
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.42
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.48
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.50
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.55
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.55
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.77
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.19
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.69
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.13
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.52
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.57
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.96
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	25.07
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.84
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	17.91
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.93
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.51
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.39
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.17
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.23
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.02
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.33

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.