Gene detail

Detailed information of OS493_009188-T1 in Lophelia pertusa

Genomic Location: scaffold_22:770909...774403
NR annotation: KAJ7373866.1, hypothetical protein OS493_009188 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5VVB8	Putative transmembrane protein 244 OS=Homo sapiens OX=9606 GN=TMEM244 PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009277 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09801 all species →	SYS1	Integral membrane protein S linking to the trans Golgi network	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019185 all species →	Family	Integral membrane protein SYS1-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12952 all species →	SYS1	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_009188-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009188-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009188-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

37.5Max TPM

10.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	5.61	15.83
polyp at pH7 6	18	15	5.61	11.98
coral polyp · control treatment	16	16	17.35	37.50
coral polyp · oil and dispersant treatment	16	16	14.06	25.84
coral polyp · oil treatment	16	16	14.32	21.84
coral polyp · dispersant treatment	16	16	8.93	15.04
Polyp	10	10	5.88	11.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.83
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.08
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.46
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.79
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.67
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.50
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.31
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.09
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.78
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.77
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.65
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.51
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.47
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.45
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.39
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.95
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.23
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.98
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.90
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.89
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.25
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.70
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.54
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.39
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.38
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.98
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.92
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.27
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.70
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.64
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.23
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.50
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.94
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.43
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.99
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.92
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.87
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.80
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.20
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.40
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.41
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.27
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.35
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.84
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.41
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.22
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.01
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.30
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.64
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.86
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.42
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.84
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.82
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.77
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.37
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.62
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.01
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.84
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.92
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.63
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.59
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.88
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.81
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.21
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.16
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.87
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.23
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.18
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.50
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.64
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.60
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.27
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.78
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.04
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.19
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.90
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.85
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.69
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.52
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.06
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.89
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.14
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.05
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.18
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.14
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.78
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.74
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.25
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.50
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.56
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.39
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.51
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.21
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.37
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.60
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.64
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.34
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.18
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.99

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.