Gene detail

Detailed information of OS493_009194-T1 in Lophelia pertusa

Genomic Location: scaffold_22:809141...810405
NR annotation: KAJ7373872.1, Exportin-2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P55060	Exportin-2 OS=Homo sapiens OX=9606 GN=CSE1L PE=1 SV=3
Q5R9J2	Exportin-2 OS=Pongo abelii OX=9601 GN=CSE1L PE=2 SV=1
Q8AY73	Exportin-2 OS=Oreochromis niloticus OX=8128 GN=cse1l PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004691 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08506 all species →	Cse1	Cse1	Repeat	Interproscan
PF03378 all species →	CAS_CSE1	CAS/CSE protein, C-terminus	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013713 all species →	Domain	Exportin-2, central domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR005043 all species →	Domain	Exportin-2, C-terminal	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

No PANTHER signature was detected for OS493_009194-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009194-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009194-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

21.1Max TPM

7.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	4.31	7.74
polyp at pH7 6	18	15	4.66	8.24
coral polyp · control treatment	16	16	9.99	21.07
coral polyp · oil and dispersant treatment	16	16	11.68	17.29
coral polyp · oil treatment	16	16	7.11	16.90
coral polyp · dispersant treatment	16	16	6.77	13.16
Polyp	10	9	3.90	7.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.74
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.34
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.26
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.33
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.17
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.12
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.06
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.76
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.66
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.50
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.36
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.84
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.83
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.63
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.25
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.91
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.82
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.24
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.22
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.80
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.01
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.98
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.79
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.67
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.37
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.15
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.19
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.91
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.32
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.66
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.07
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.06
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.13
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.68
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.22
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.86
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.64
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.59
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.90
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.13
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.09
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.91
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.31
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.61
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.49
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.12
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.29
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.70
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.66
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.13
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.74
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.49
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.63
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.12
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.07
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.30
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.12
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.63
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.12
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.48
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.90
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.65
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.35
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.16
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.97
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.43
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.31
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.97
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.55
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.52
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.64
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.46
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.39
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.89
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.43
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.17
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.16
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.37
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.18
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.79
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.56
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.54
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.29
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.88
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.44
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.12
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.69
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.04
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.66
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.52
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.53
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.60
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.62
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.79
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.28
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.59
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.97
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.66
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.40
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.49
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.19
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.