Gene detail

Detailed information of OS493_009198-T1 in Lophelia pertusa

Genomic Location: scaffold_22:835121...843938
NR annotation: KAJ7373876.1, ATPase AAA domain-containing protein 2B [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_009198-T1

ATGTTGACAGATCATCGGTATTTGACAGGATTTGAAAACTCAAAATCTCCTAAGAAGAAAGATGAAAGGAAAAGATATTTGATGGACGAAGAGAGCGATTCACAAACCGAGGGTGATGAGGATAATGACGTTGCTAAAACACCCAGCATGTACGACCTTGTCAAGAGAAAGCACGACCAGACTCCAACACCAGAGAAACGATCAACTAGAAAAGACAGACATCAAGGTGATGAGGAGCAGCCAGAGGATAGTGATGATGAGGAGGATGAAGATGATGATGATGATGATGATGACGACGGCGATGATGATGATGATGATGATGACGACGACGATGGAGAGGAGGAGGAGGGGGACGAGGAGAAAGGTTATAAAGGTTATCAGCTAAGGAAGAGAAGGCCTATAACAAACAGATATACTGCACCAGTACCTTTGAAATCTAGTGGAAAAGAAAAGAGAGAGTTTCATATGGCTGTAGTAAGAAGAAAGAGTGGCAAAAGAACGAAACAAGCGCAGTATGCTTCTCCATATGCTTCTCCTGTAAGACGAATGCGCAGACACCAAAGGAAAGCTCACAACATGAGCTCTTCTACTTCCTCATCTGATGACTCAGACAACGATGAAAGAAAGTTTGAACACAGAAAGGCTAAGAGCATGGCTAAAGCCAGAGGTAGATGTCTCCCAATGAACTTTACCATGGATGACGCAGCCTCTGGAATTATCAAGGAGAGATCCAGGATTGGTTCAAGTTTAGCTGATGTGGATCCTATGAACATCGACAGCAAGGTAATGTTTGACGCAGTTGGTGGTCTAAACAAGCAGATCCGGGCACTAAAAGAAATGGTCCTGTTTCCACTGATGTACCCTGAAGTGTTTCAAAAGTTCAAGATTTCTCCCCCGAGAGGGGTTCTCTTCCATGGATCACCAGGAACAGGAAAAACGCTGGTAGCCCGAGCTCTTGCTAACGAGTGTAGCCAGGGTGACAAGAAGGTTGCATTTTTCATGAGGAAAGGTGCGGATTGTCTCAGTAAATGGGTTGGTGAATCTGAAAGACAACTGAGACTCTTGTTTGACCAGGCATTTAGTATGAGGCCAGCCATCATATTTTTTGATGAGATAGATGGGCTGGCACCTGTACGTTCTAGCCGTCAGGACCAGATTCACAGTTCCATTGTATCGACCTTATTGGCTCTGATGGATGGCTTGGATAGTCGAGGAGAGATCGTAGTCATTGGTGCTACCAACAGAATTGATGCTATTGATCCAGCACTGAGGCGGCCTGGTCGCTTTGACAGGGAATTTCAATTTGCTCTTCCTGATAGAAATCAGATCGCTGCGTGGGTTTATTGCGGTGCTGACATAAAGGCCTTGTGTACAGAGACTGCACTGTTTGCCTTGAGAAGATGCTATCCACAAATCTACAACAGCACAAGGAAACTGTTAGTAGATGTCAACTCCATTGAGGTGACTGCTAAGGACTTCCAGAAGGCAATGACGACAATAGTTCCTGCCTCTCAGCGATCAGTGGTTTCTCCCGCAAGGGCTCTCTCATCCCTTATGTGGCCATTGTTGAAGAAGGGTTTGGCTCATGCAGTGGAGATCCTGGAGAAGATATTTCCCCCTGCTCACATTAAGACAGTGACAGAGAGCAGTCCTAGTAGCCTGATGGGAAATCCCAGCAGCAGTCGTCATGAGCAACGCAGCAGGGTGGCTGTTGTCTTGAGTGACGAGGAGGCTAGTTCAGATGACGACTTGGGACCTCCCATCTTTGAGGCTCTTCCTGGTTCATCAAGAAGTGAGCGTTACATACGAAGAGCACAGCAGTTCTCCGGCAATCCAGAAATGGCTGCAGAAGCTCATCATACTTCTTTCTTCAGCTCAGCAAATGGCCAAACCAGGGGGCTGTCAACATATCGACCTAGATTCCTGGTATGTGGTGGGCAAGGCATGGGTCAGTCGACTCATATTGCCCCTGCTTTGCTGCATGCTATGGAGCATATGACCGTGCACTGTTTGGACTTACCTGCTCTGTATGGAGTCACCTCCAAAACGCCTGAAGAAGCTTGCTCACAGTTGTTTCGTGAAGCACGTCGCGCATCCCCTTGTGTAGTATATTCACCTCATTTTGATGCCTTGTGGAATGCCACCGGAGATAGCCTGCATGCTACATTGCTGTCATTACTTCACGATCTTCCTCCACTTGCTCCTGTGTTGTTCCTGGCGACTGCTGATGACAGCTGGTGTTACCTTCCCTCTATTATGAAGGAACTCTTTTCTGAGGAAATTGGACAGGTATTTCAAGTGGCTGATCCTACCTCTGACGAGAGAAGAGCTTTTTTCCATAGTCTGTTCCTTGAGGAAGCTGTTCAACCACCCAAAGCAAAGAAATCAAAAAAAGATCAAGTGATGGAAGTGTTGCCTTTTGCTCCTACTCCACCTCCACGGCATCTGTCAGGAGCGGAACTACAGAAGGCTCGGCATGACGAAGAGAACACCATGAGGGAACTACGCATCTTCCTCAGAGATGTAAACGCAAAGCTTTTTCAAGATCGAAGATTCAAAGAATTTACAAAACCAGTGGATTTGATAGAGGTACCTGACTATCTTGAGGTAATCGATGAACCAATGGACCTGACAACCATAGTACACAAAATTGACTGTCATCAATACAGTACATGTGCGCAGTACCTGGCAGATGTCGATTTGATCACAAGCAATGCTCTGAAGTACAACCCTGACCGCGACCCAATGGACAAACTCATCCGACACAGAGGTTGTGAACTCAGTGATATGGCACACTCCGAAATCAAGTCACAACTAGAACCAGAGTTTGAGAAGGTGACTATGCTGTAG

Transcript

OS493_009198-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ULI0	ATPase family AAA domain-containing protein 2B OS=Homo sapiens OX=9606 GN=ATAD2B PE=1 SV=4
Q8CDM1	ATPase family AAA domain-containing protein 2 OS=Mus musculus OX=10090 GN=Atad2 PE=1 SV=1
Q5RDX4	ATPase family AAA domain-containing protein 2 OS=Pongo abelii OX=9601 GN=ATAD2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006328 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR045199 all species →	Family	ATPase family AAA domain-containing protein ATAD2-like	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23069 all species →	AAA DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22531	ATAD2; ATPase family AAA domain-containing protein 2	EC:3.6.1.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_009198-T1 global co-expression network