Gene detail

Detailed information of OS493_009241-T1 in Lophelia pertusa

Genomic Location: scaffold_22:1157489...1162366
NR annotation: KAJ7373916.1, Cytosolic phospholipase A2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P50392	Cytosolic phospholipase A2 OS=Danio rerio OX=7955 GN=pla2g4a PE=2 SV=1
P49147	Cytosolic phospholipase A2 OS=Gallus gallus OX=9031 GN=PLA2G4A PE=1 SV=1
Q7T0T9	Cytosolic phospholipase A2 OS=Xenopus laevis OX=8355 GN=pla2g4a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001136 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01735 all species →	PLA2_B	Lysophospholipase catalytic domain	Family	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016035 all species →	Homologous_superfamily	Acyl transferase/acyl hydrolase/lysophospholipase	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR002642 all species →	Domain	Lysophospholipase, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10728 all species →	CYTOSOLIC PHOSPHOLIPASE A2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004623 all species →	Molecular Function	phospholipase A2 activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005544 all species →	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0046475 all species →	Biological Process	glycerophospholipid catabolic process	Interproscan
GO:0047498 all species →	Molecular Function	calcium-dependent phospholipase A2 activity	Interproscan
GO:0004620 all species →	Molecular Function	phospholipase activity	Interproscan
GO:0009395 all species →	Biological Process	phospholipid catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009241-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009241-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

97TPM > 0

7Conditions

2,943.9Max TPM

212.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	11	0.86	2.86
polyp at pH7 6	18	15	3.33	6.86
coral polyp · control treatment	16	16	62.18	365.91
coral polyp · oil and dispersant treatment	16	16	166.27	643.13
coral polyp · oil treatment	16	16	50.60	104.92
coral polyp · dispersant treatment	16	16	1,173.93	2,943.88
Polyp	10	7	9.68	67.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.86
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.21
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.16
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.80
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.62
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.33
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.27
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.59
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.59
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.41
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.86
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.87
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.86
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.85
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.66
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.43
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.29
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.51
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.81
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.49
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.71
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.53
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.50
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.12
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.51
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	365.91
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	168.58
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	150.51
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	112.26
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.94
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.05
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.55
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.08
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.07
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.43
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.80
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.70
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.50
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.25
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.04
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.17
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	643.13
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	318.59
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	237.97
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	185.22
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	182.19
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	179.46
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	171.47
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	140.80
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.18
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.41
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.94
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.91
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.25
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.87
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.32
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.59
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	104.92
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	103.27
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	90.20
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.13
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.78
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.94
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.29
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.55
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.32
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.65
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.61
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.81
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.10
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,943.88
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,682.83
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,675.30
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,454.56
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,371.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,234.20
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,225.74
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,223.93
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,157.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,022.88
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	961.14
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	776.25
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	710.13
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	655.73
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	524.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	163.38
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	67.07
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	14.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.96
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.22
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.80
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.62
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.38
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.