Gene detail

Detailed information of OS493_009242-T1 in Lophelia pertusa

Genomic Location: scaffold_22:1168448...1178291
NR annotation: KAJ7373917.1, hypothetical protein OS493_009242 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1L2I9	Transmembrane protein 214-B OS=Xenopus laevis OX=8355 GN=tmem214-b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004712 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10151 all species →	TMEM214	TMEM214, C-terminal, caspase 4 activator	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019308 all species →	Family	Transmembrane protein 214	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13448 all species →	TRANSMEMBRANE PROTEIN 214	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009242-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009242-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

127.6Max TPM

62.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	50.66	75.04
polyp at pH7 6	18	18	51.16	89.18
coral polyp · control treatment	16	16	74.37	127.57
coral polyp · oil and dispersant treatment	16	16	84.74	110.03
coral polyp · oil treatment	16	16	65.25	100.63
coral polyp · dispersant treatment	16	16	54.55	100.93
Polyp	10	10	60.72	81.29

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.04
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.31
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.39
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.04
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.42
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.07
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.03
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.27
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.16
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.60
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.68
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.73
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.12
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.56
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.83
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.90
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.83
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.84
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	89.18
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.94
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.80
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.33
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.10
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.87
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.98
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.82
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.99
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.11
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.42
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.37
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.19
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.11
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.86
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.67
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.01
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.06
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	127.57
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.63
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.57
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	82.40
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.40
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.86
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.28
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.74
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.25
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.90
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.64
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.36
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.63
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.59
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	110.03
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	107.95
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	105.47
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	100.05
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	99.53
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.30
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.86
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.37
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.54
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.76
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.37
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.25
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.52
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.42
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.30
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	100.63
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.72
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.98
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	78.23
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.23
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.63
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.88
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.55
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.40
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.81
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.26
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.76
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.81
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.83
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	100.93
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.75
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.55
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.19
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.19
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.98
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.09
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.44
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.29
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.92
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.78
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.32
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.17
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.77
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.71
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.75
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	81.29
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	79.84
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	76.59
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	73.79
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	64.87
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	57.12
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	50.27
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	47.23
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	41.26
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	34.93

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.