Detailed information of OS493_009290-T1 in Lophelia pertusa

Genomic Location: scaffold_22:1517325...1524290
NR annotation: KAJ7373962.1, AP-1 complex subunit beta-1 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P52303AP-1 complex subunit beta-1 OS=Rattus norvegicus OX=10116 GN=Ap1b1 PE=1 SV=1
Q08DS7AP-1 complex subunit beta-1 OS=Bos taurus OX=9913 GN=AP2B1 PE=2 SV=1
O35643AP-1 complex subunit beta-1 OS=Mus musculus OX=10090 GN=Ap1b1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004172 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02883
all species →		Alpha_adaptinC2Adaptin C-terminal domainDomainInterproscan
PF09066
all species →		B2-adapt-app_CBeta2-adaptin appendage, C-terminal sub-domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015151
all species →		DomainBeta-adaptin appendage, C-terminal subdomainInterproscan
IPR013041
all species →		Homologous_superfamilyClathrin adaptor, appendage, Ig-like subdomain superfamilyInterproscan
IPR013037
all species →		Homologous_superfamilyClathrin adaptor, beta-adaptin, appendage, Ig-like subdomainInterproscan
IPR008152
all species →		DomainClathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomainInterproscan
IPR012295
all species →		Homologous_superfamilyTBP domain superfamilyInterproscan
IPR026739
all species →		FamilyAP complex subunit betaInterproscan
IPR011989
all species →		Homologous_superfamilyArmadillo-like helicalInterproscan
IPR009028
all species →		Homologous_superfamilyCoatomer/calthrin adaptor appendage, C-terminal subdomainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11134
all species →		ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006886
all species →		Biological Processintracellular protein transportInterproscan
GO:0016192
all species →		Biological Processvesicle-mediated transportInterproscan
GO:0030131
all species →		Cellular Componentclathrin adaptor complexInterproscan
GO:0030117
all species →		Cellular Componentmembrane coatInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_009290-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_009290-T1 global co-expression network
TOP