Gene detail

Detailed information of OS493_009291-T1 in Lophelia pertusa

Genomic Location: scaffold_22:1525514...1529934
NR annotation: KAJ7373963.1, Follistatin- protein 5 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002514 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_009291-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR051200 all species →	Family	Multi-functional host-pathogen interaction and enzymatic activity protein	Interproscan
IPR011045 all species →	Homologous_superfamily	Nitrous oxide reductase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47197 all species →	PROTEIN NIRF	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009291-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009291-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

63.7Max TPM

24.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	18.64	36.80
polyp at pH7 6	18	18	18.45	27.72
coral polyp · control treatment	16	16	29.88	48.67
coral polyp · oil and dispersant treatment	16	16	30.36	60.73
coral polyp · oil treatment	16	16	38.06	63.71
coral polyp · dispersant treatment	16	16	20.32	33.41
Polyp	10	10	8.44	25.13

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.80
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.79
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.14
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.52
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.55
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.34
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.74
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.52
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.30
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.31
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.45
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.84
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.72
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.85
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.25
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.13
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.94
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.72
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.62
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.60
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.48
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.86
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.61
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.12
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.55
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.27
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.63
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.57
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.32
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.80
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.64
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.62
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.47
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.08
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.75
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.73
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.56
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.84
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.06
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.88
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.71
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.25
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.89
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.98
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.66
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.78
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.04
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.73
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.55
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.73
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.49
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.23
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.53
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.32
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.21
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.90
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.33
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.58
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.50
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.30
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.53
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.27
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.08
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.57
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.13
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.71
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.88
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.95
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.91
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.11
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.89
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.97
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.30
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.19
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.72
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.51
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.98
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.29
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.65
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.36
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.55
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.41
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.69
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.61
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.14
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.04
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.87
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.76
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.22
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.69
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.59
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.26
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.94
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.62
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.88
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.45
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	25.13
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.49
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.96
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.74
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.65
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.32
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.28
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.35
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.27
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.23

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.