Gene detail

Detailed information of OS493_009331-T1 in Lophelia pertusa

Genomic Location: scaffold_22:1912122...1912985
NR annotation: KAJ7374003.1, XK- protein 6 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008136 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09815 all species →	XK-related	XK-related protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018629 all species →	Family	XK-related protein	Interproscan
IPR050895 all species →	Family	XK-related phospholipid scramblase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16024 all species →	XK-RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0043652 all species →	Biological Process	engulfment of apoptotic cell	Interproscan
GO:0070782 all species →	Biological Process	phosphatidylserine exposure on apoptotic cell surface	Interproscan
GO:1902742 all species →	Biological Process	apoptotic process involved in development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26813	XKR8; XK-related protein 8	-	Efferocytosis	ko04148	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_009331-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

20.1Max TPM

2.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	1.92	4.15
polyp at pH7 6	18	17	1.90	4.14
coral polyp · control treatment	16	16	4.50	12.23
coral polyp · oil and dispersant treatment	16	15	4.49	20.14
coral polyp · oil treatment	16	16	3.59	10.62
coral polyp · dispersant treatment	16	16	1.50	3.28
Polyp	10	9	2.50	8.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.15
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.55
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.29
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.13
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.49
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.17
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.04
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.03
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.93
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.86
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.48
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.91
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.89
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.80
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.78
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.61
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.30
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.14
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.46
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.28
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.02
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.94
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.71
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.08
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.06
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.06
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.63
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.63
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.46
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.07
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.04
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.84
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.47
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.39
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.23
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.94
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.19
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.89
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.94
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.66
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.31
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.20
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.81
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.46
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.04
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.62
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.58
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.38
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.06
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.63
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.14
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.40
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.24
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.72
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.51
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.80
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.12
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.37
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.22
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.85
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.70
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.15
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.10
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.31
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.62
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.29
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.02
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.87
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.66
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.91
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.40
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.11
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.09
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.85
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.65
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.42
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.27
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.46
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.12
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.67
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.28
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.99
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.70
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.63
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.18
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.68
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.62
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.54
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.42
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.61
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.59
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.55
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.51
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.42
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.10
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.56
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.62
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.09
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.99
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.48
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.89
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.29
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.87
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.18
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.