Gene detail

Detailed information of OS493_009342-T1 in Lophelia pertusa

Genomic Location: scaffold_22:2023132...2030876
NR annotation: KAJ7374013.1, glycerophosphoinositol permease [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68FF6	ARF GTPase-activating protein GIT1 OS=Mus musculus OX=10090 GN=Git1 PE=1 SV=1
Q9Y2X7	ARF GTPase-activating protein GIT1 OS=Homo sapiens OX=9606 GN=GIT1 PE=1 SV=2
Q14161	ARF GTPase-activating protein GIT2 OS=Homo sapiens OX=9606 GN=GIT2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004494 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16559 all species →	GIT_CC	GIT coiled-coil Rho guanine nucleotide exchange factor	Coiled-coil	Interproscan
PF08518 all species →	GIT_SHD	Spa2 homology domain (SHD) of GIT	Family	Interproscan
PF12205 all species →	GIT1_C	G protein-coupled receptor kinase-interacting protein 1 C term	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032352 all species →	Domain	Arf GTPase-activating protein GIT1/2, coiled-coil domain	Interproscan
IPR047161 all species →	Family	ARF GTPase-activating protein Git-like	Interproscan
IPR013724 all species →	Domain	GIT, Spa2 homology (SHD) domain	Interproscan
IPR022018 all species →	Domain	ARF GTPase-activating protein GIT1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46097 all species →	G PROTEIN-COUPLED RECEPTOR KINASE INTERACTING ARFGAP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0007420 all species →	Biological Process	brain development	Interproscan
GO:0008277 all species →	Biological Process	regulation of G protein-coupled receptor signaling pathway	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0032012 all species →	Biological Process	regulation of ARF protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_009342-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_009342-T1 global co-expression network