Detailed information of OS493_009344-T1 in Lophelia pertusa

Genomic Location: scaffold_22:2037867...2044174
NR annotation: KAJ7374015.1, E3 ubiquitin-protein ligase BRE1A [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O75150E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens OX=9606 GN=RNF40 PE=1 SV=5
Q5RAU7E3 ubiquitin-protein ligase BRE1B OS=Pongo abelii OX=9601 GN=RNF40 PE=2 SV=1
Q5VTR2E3 ubiquitin-protein ligase BRE1A OS=Homo sapiens OX=9606 GN=RNF20 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005469 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00097
all species →		zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF08647
all species →		BRE1BRE1 E3 ubiquitin ligaseCoiled-coilInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR018957
all species →		DomainZinc finger, C3HC4 RING-typeInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR013956
all species →		FamilyE3 ubiquitin ligase Bre1Interproscan
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23163
all species →		RING FINGER PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan
GO:0004842
all species →		Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0033503
all species →		Cellular ComponentHULC complexInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan
GO:0071894
all species →		Biological Processobsolete histone H2B conserved C-terminal lysine ubiquitinationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10696BRE1; E3 ubiquitin-protein ligase BRE1EC:2.3.2.27
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_009344-T1 global co-expression network
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